miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18700 3' -53.9 NC_004682.1 + 15959 0.66 0.727342
Target:  5'- cCAACGa-ACUAagcACGGCagaUCCGCAAGg -3'
miRNA:   3'- aGUUGCggUGGU---UGCCGa--AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 16324 0.66 0.748733
Target:  5'- aCAcCGCgACCAGCGGUcgCuCGCAu- -3'
miRNA:   3'- aGUuGCGgUGGUUGCCGaaG-GCGUuc -5'
18700 3' -53.9 NC_004682.1 + 16624 1.09 0.001207
Target:  5'- gUCAACGCCACCAACGGCUUCCGCAAGu -3'
miRNA:   3'- -AGUUGCGGUGGUUGCCGAAGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 17117 0.72 0.405907
Target:  5'- -aGGCGUCACCGACgcacuGGCUUCCggcGCGGGu -3'
miRNA:   3'- agUUGCGGUGGUUG-----CCGAAGG---CGUUC- -5'
18700 3' -53.9 NC_004682.1 + 17386 0.71 0.444702
Target:  5'- aCGGCGUCACCAAccuguucaccCGGCUcauggaguccggUCUGCAGGc -3'
miRNA:   3'- aGUUGCGGUGGUU----------GCCGA------------AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 18092 0.8 0.13474
Target:  5'- aCAACGCCACCGAUGGUggcugCCGCcuGAGc -3'
miRNA:   3'- aGUUGCGGUGGUUGCCGaa---GGCG--UUC- -5'
18700 3' -53.9 NC_004682.1 + 20768 0.67 0.716494
Target:  5'- uUCAugGaUCACUAcCGGgUggUCCGCGAGg -3'
miRNA:   3'- -AGUugC-GGUGGUuGCCgA--AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 21006 0.68 0.661189
Target:  5'- aCAGCGUCAgCAGCaGGCaccacUUCGCAGGc -3'
miRNA:   3'- aGUUGCGGUgGUUG-CCGa----AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 21185 0.74 0.335038
Target:  5'- gUCGGCGCUACCuccACGGCgaagacCCGCAc- -3'
miRNA:   3'- -AGUUGCGGUGGu--UGCCGaa----GGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 21888 0.68 0.627575
Target:  5'- -gAACGCCACCAA-GGCgUUCaCGCu-- -3'
miRNA:   3'- agUUGCGGUGGUUgCCG-AAG-GCGuuc -5'
18700 3' -53.9 NC_004682.1 + 23182 0.68 0.649997
Target:  5'- aCuGCGCCAC--GCGGCgaCCGCAc- -3'
miRNA:   3'- aGuUGCGGUGguUGCCGaaGGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 24143 0.82 0.098317
Target:  5'- aCAAgGUCGCCAACGGUgaCCGCGAGg -3'
miRNA:   3'- aGUUgCGGUGGUUGCCGaaGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 24278 0.69 0.582859
Target:  5'- gCAACGCCGCCAagACGaGCUacgucuaCGCGAu -3'
miRNA:   3'- aGUUGCGGUGGU--UGC-CGAag-----GCGUUc -5'
18700 3' -53.9 NC_004682.1 + 25000 0.71 0.454722
Target:  5'- aCGACGCCGacUCGGCGGCaUCUGCu-- -3'
miRNA:   3'- aGUUGCGGU--GGUUGCCGaAGGCGuuc -5'
18700 3' -53.9 NC_004682.1 + 26244 0.7 0.517213
Target:  5'- cUCggUGCCGuCC-GCGaGCUUCCGguGGg -3'
miRNA:   3'- -AGuuGCGGU-GGuUGC-CGAAGGCguUC- -5'
18700 3' -53.9 NC_004682.1 + 26265 0.66 0.758204
Target:  5'- -gGACGCCGCucaacugCAACGGCaUCUcgauGCGGGg -3'
miRNA:   3'- agUUGCGGUG-------GUUGCCGaAGG----CGUUC- -5'
18700 3' -53.9 NC_004682.1 + 26731 0.66 0.759249
Target:  5'- gCGAaGCUGCuCGACGGCUggucguucaUCCGCAu- -3'
miRNA:   3'- aGUUgCGGUG-GUUGCCGA---------AGGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 27465 0.66 0.723014
Target:  5'- cCGugGCCACCcguacCGGCgauagaauccucaUCUGCAAGu -3'
miRNA:   3'- aGUugCGGUGGuu---GCCGa------------AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 27497 0.69 0.593997
Target:  5'- -gAACGCCagugcGCCGACGGCgauugugCCGCc-- -3'
miRNA:   3'- agUUGCGG-----UGGUUGCCGaa-----GGCGuuc -5'
18700 3' -53.9 NC_004682.1 + 27645 0.69 0.560719
Target:  5'- -aGGCGa-ACCAGCGGCUcugCCGCAGc -3'
miRNA:   3'- agUUGCggUGGUUGCCGAa--GGCGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.