miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18700 3' -53.9 NC_004682.1 + 27871 0.66 0.759249
Target:  5'- -gAAgGCCAgCCcgGAgGGCUUCCGCuAGu -3'
miRNA:   3'- agUUgCGGU-GG--UUgCCGAAGGCGuUC- -5'
18700 3' -53.9 NC_004682.1 + 28695 0.73 0.378245
Target:  5'- cCGAUGCCGCCcacucGCGGCggCgGCGGGa -3'
miRNA:   3'- aGUUGCGGUGGu----UGCCGaaGgCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 28773 0.66 0.778849
Target:  5'- cCGcCGCCGCCGcgaguggGCGGCaUCgGCAc- -3'
miRNA:   3'- aGUuGCGGUGGU-------UGCCGaAGgCGUuc -5'
18700 3' -53.9 NC_004682.1 + 29321 0.74 0.335038
Target:  5'- uUCAuCGCCGCCGuccACGGCUgUCuCGCAGa -3'
miRNA:   3'- -AGUuGCGGUGGU---UGCCGA-AG-GCGUUc -5'
18700 3' -53.9 NC_004682.1 + 30252 0.67 0.716494
Target:  5'- aUCAGCGCCuCCc-CGGUcacgUCGCGAGa -3'
miRNA:   3'- -AGUUGCGGuGGuuGCCGaa--GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 31224 0.66 0.779865
Target:  5'- cCGcCGgCACCAGCGggaucaGCUUCUGCAGc -3'
miRNA:   3'- aGUuGCgGUGGUUGC------CGAAGGCGUUc -5'
18700 3' -53.9 NC_004682.1 + 32896 0.71 0.444702
Target:  5'- aUCGACG-CGCCGggacGCGGCUacuUCCGCGc- -3'
miRNA:   3'- -AGUUGCgGUGGU----UGCCGA---AGGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 33449 0.66 0.748733
Target:  5'- uUCGACugccucuggguGCCACCAcccCGGCUgCCGCc-- -3'
miRNA:   3'- -AGUUG-----------CGGUGGUu--GCCGAaGGCGuuc -5'
18700 3' -53.9 NC_004682.1 + 33491 0.79 0.159512
Target:  5'- ---cCGCCGCCAGCGGCcugCUGCGGGg -3'
miRNA:   3'- aguuGCGGUGGUUGCCGaa-GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 33795 0.66 0.748733
Target:  5'- -gAAgGCCccgGCCAagGCGGCUcCCGcCAAGg -3'
miRNA:   3'- agUUgCGG---UGGU--UGCCGAaGGC-GUUC- -5'
18700 3' -53.9 NC_004682.1 + 33871 0.67 0.694548
Target:  5'- aCGACGagGCCcaGGCGGCUcCCGcCGAGg -3'
miRNA:   3'- aGUUGCggUGG--UUGCCGAaGGC-GUUC- -5'
18700 3' -53.9 NC_004682.1 + 34976 0.7 0.506541
Target:  5'- -gAugGUCGCCAACGGCgagCCGgGGu -3'
miRNA:   3'- agUugCGGUGGUUGCCGaa-GGCgUUc -5'
18700 3' -53.9 NC_004682.1 + 36029 0.66 0.779865
Target:  5'- -gAACGCcucauguaCugCGGCGGCgaggCCGCAAa -3'
miRNA:   3'- agUUGCG--------GugGUUGCCGaa--GGCGUUc -5'
18700 3' -53.9 NC_004682.1 + 36560 0.69 0.560719
Target:  5'- ---uCGCCGCCcuGCGGCUUgCCGCc-- -3'
miRNA:   3'- aguuGCGGUGGu-UGCCGAA-GGCGuuc -5'
18700 3' -53.9 NC_004682.1 + 36643 0.69 0.582859
Target:  5'- aCGACuCCGaCGGCGGCaagCCGCAGGg -3'
miRNA:   3'- aGUUGcGGUgGUUGCCGaa-GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 37250 0.72 0.396545
Target:  5'- -gGAUGCCGCC-ACGGUggCCGUggGu -3'
miRNA:   3'- agUUGCGGUGGuUGCCGaaGGCGuuC- -5'
18700 3' -53.9 NC_004682.1 + 39481 0.71 0.434807
Target:  5'- aUCuuCGCCACCuACGGCaucaCCGcCGAGg -3'
miRNA:   3'- -AGuuGCGGUGGuUGCCGaa--GGC-GUUC- -5'
18700 3' -53.9 NC_004682.1 + 41016 0.72 0.396545
Target:  5'- gUCGAgcgaGCCGCCaAGCGGUggaUUCCGUGAGg -3'
miRNA:   3'- -AGUUg---CGGUGG-UUGCCG---AAGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 41271 0.66 0.78088
Target:  5'- cCGACcgGCCACC-ACGGUUcuucaccguggagacCCGCAGGg -3'
miRNA:   3'- aGUUG--CGGUGGuUGCCGAa--------------GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 41611 0.67 0.705558
Target:  5'- aCAACGUgACCAACG---UCCGCAc- -3'
miRNA:   3'- aGUUGCGgUGGUUGCcgaAGGCGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.