Results 61 - 68 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18700 | 3' | -53.9 | NC_004682.1 | + | 42537 | 0.68 | 0.627575 |
Target: 5'- cCGACGUgGCuCGGCGGCgccUCUGCGGc -3' miRNA: 3'- aGUUGCGgUG-GUUGCCGa--AGGCGUUc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 43986 | 0.69 | 0.593997 |
Target: 5'- ----aGCCGCC--UGGCUcCCGCAGGg -3' miRNA: 3'- aguugCGGUGGuuGCCGAaGGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 44132 | 0.7 | 0.495964 |
Target: 5'- cCAcCGCCugCGGCGGCUUCacaacauCAAGg -3' miRNA: 3'- aGUuGCGGugGUUGCCGAAGgc-----GUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 44731 | 0.71 | 0.485489 |
Target: 5'- cCGACGCCGCCggUGGCca-CGUAc- -3' miRNA: 3'- aGUUGCGGUGGuuGCCGaagGCGUuc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 44802 | 0.8 | 0.123726 |
Target: 5'- aCGugGCCACCGGCGGCgUCgGCAu- -3' miRNA: 3'- aGUugCGGUGGUUGCCGaAGgCGUuc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 46453 | 0.69 | 0.582859 |
Target: 5'- -gAGCGCgCugCucUGGCUcUCCGCGAGg -3' miRNA: 3'- agUUGCG-GugGuuGCCGA-AGGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 49265 | 0.66 | 0.759249 |
Target: 5'- aCAugGCCAgCCucaAGCGGagcaaugaCCGCAAGg -3' miRNA: 3'- aGUugCGGU-GG---UUGCCgaa-----GGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 49661 | 0.67 | 0.694548 |
Target: 5'- uUCAACuggGCCgagacGCUGACGGUggUUCGCAAGg -3' miRNA: 3'- -AGUUG---CGG-----UGGUUGCCGa-AGGCGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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