miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18700 3' -53.9 NC_004682.1 + 33449 0.66 0.748733
Target:  5'- uUCGACugccucuggguGCCACCAcccCGGCUgCCGCc-- -3'
miRNA:   3'- -AGUUG-----------CGGUGGUu--GCCGAaGGCGuuc -5'
18700 3' -53.9 NC_004682.1 + 32896 0.71 0.444702
Target:  5'- aUCGACG-CGCCGggacGCGGCUacuUCCGCGc- -3'
miRNA:   3'- -AGUUGCgGUGGU----UGCCGA---AGGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 31224 0.66 0.779865
Target:  5'- cCGcCGgCACCAGCGggaucaGCUUCUGCAGc -3'
miRNA:   3'- aGUuGCgGUGGUUGC------CGAAGGCGUUc -5'
18700 3' -53.9 NC_004682.1 + 30252 0.67 0.716494
Target:  5'- aUCAGCGCCuCCc-CGGUcacgUCGCGAGa -3'
miRNA:   3'- -AGUUGCGGuGGuuGCCGaa--GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 29321 0.74 0.335038
Target:  5'- uUCAuCGCCGCCGuccACGGCUgUCuCGCAGa -3'
miRNA:   3'- -AGUuGCGGUGGU---UGCCGA-AG-GCGUUc -5'
18700 3' -53.9 NC_004682.1 + 28773 0.66 0.778849
Target:  5'- cCGcCGCCGCCGcgaguggGCGGCaUCgGCAc- -3'
miRNA:   3'- aGUuGCGGUGGU-------UGCCGaAGgCGUuc -5'
18700 3' -53.9 NC_004682.1 + 28695 0.73 0.378245
Target:  5'- cCGAUGCCGCCcacucGCGGCggCgGCGGGa -3'
miRNA:   3'- aGUUGCGGUGGu----UGCCGaaGgCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 27871 0.66 0.759249
Target:  5'- -gAAgGCCAgCCcgGAgGGCUUCCGCuAGu -3'
miRNA:   3'- agUUgCGGU-GG--UUgCCGAAGGCGuUC- -5'
18700 3' -53.9 NC_004682.1 + 27645 0.69 0.560719
Target:  5'- -aGGCGa-ACCAGCGGCUcugCCGCAGc -3'
miRNA:   3'- agUUGCggUGGUUGCCGAa--GGCGUUc -5'
18700 3' -53.9 NC_004682.1 + 27497 0.69 0.593997
Target:  5'- -gAACGCCagugcGCCGACGGCgauugugCCGCc-- -3'
miRNA:   3'- agUUGCGG-----UGGUUGCCGaa-----GGCGuuc -5'
18700 3' -53.9 NC_004682.1 + 27465 0.66 0.723014
Target:  5'- cCGugGCCACCcguacCGGCgauagaauccucaUCUGCAAGu -3'
miRNA:   3'- aGUugCGGUGGuu---GCCGa------------AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 26731 0.66 0.759249
Target:  5'- gCGAaGCUGCuCGACGGCUggucguucaUCCGCAu- -3'
miRNA:   3'- aGUUgCGGUG-GUUGCCGA---------AGGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 26265 0.66 0.758204
Target:  5'- -gGACGCCGCucaacugCAACGGCaUCUcgauGCGGGg -3'
miRNA:   3'- agUUGCGGUG-------GUUGCCGaAGG----CGUUC- -5'
18700 3' -53.9 NC_004682.1 + 26244 0.7 0.517213
Target:  5'- cUCggUGCCGuCC-GCGaGCUUCCGguGGg -3'
miRNA:   3'- -AGuuGCGGU-GGuUGC-CGAAGGCguUC- -5'
18700 3' -53.9 NC_004682.1 + 25000 0.71 0.454722
Target:  5'- aCGACGCCGacUCGGCGGCaUCUGCu-- -3'
miRNA:   3'- aGUUGCGGU--GGUUGCCGaAGGCGuuc -5'
18700 3' -53.9 NC_004682.1 + 24278 0.69 0.582859
Target:  5'- gCAACGCCGCCAagACGaGCUacgucuaCGCGAu -3'
miRNA:   3'- aGUUGCGGUGGU--UGC-CGAag-----GCGUUc -5'
18700 3' -53.9 NC_004682.1 + 24143 0.82 0.098317
Target:  5'- aCAAgGUCGCCAACGGUgaCCGCGAGg -3'
miRNA:   3'- aGUUgCGGUGGUUGCCGaaGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 23182 0.68 0.649997
Target:  5'- aCuGCGCCAC--GCGGCgaCCGCAc- -3'
miRNA:   3'- aGuUGCGGUGguUGCCGaaGGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 21888 0.68 0.627575
Target:  5'- -gAACGCCACCAA-GGCgUUCaCGCu-- -3'
miRNA:   3'- agUUGCGGUGGUUgCCG-AAG-GCGuuc -5'
18700 3' -53.9 NC_004682.1 + 21185 0.74 0.335038
Target:  5'- gUCGGCGCUACCuccACGGCgaagacCCGCAc- -3'
miRNA:   3'- -AGUUGCGGUGGu--UGCCGaa----GGCGUuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.