Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18700 | 3' | -53.9 | NC_004682.1 | + | 21006 | 0.68 | 0.661189 |
Target: 5'- aCAGCGUCAgCAGCaGGCaccacUUCGCAGGc -3' miRNA: 3'- aGUUGCGGUgGUUG-CCGa----AGGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 20768 | 0.67 | 0.716494 |
Target: 5'- uUCAugGaUCACUAcCGGgUggUCCGCGAGg -3' miRNA: 3'- -AGUugC-GGUGGUuGCCgA--AGGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 18092 | 0.8 | 0.13474 |
Target: 5'- aCAACGCCACCGAUGGUggcugCCGCcuGAGc -3' miRNA: 3'- aGUUGCGGUGGUUGCCGaa---GGCG--UUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 17386 | 0.71 | 0.444702 |
Target: 5'- aCGGCGUCACCAAccuguucaccCGGCUcauggaguccggUCUGCAGGc -3' miRNA: 3'- aGUUGCGGUGGUU----------GCCGA------------AGGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 17117 | 0.72 | 0.405907 |
Target: 5'- -aGGCGUCACCGACgcacuGGCUUCCggcGCGGGu -3' miRNA: 3'- agUUGCGGUGGUUG-----CCGAAGG---CGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 16624 | 1.09 | 0.001207 |
Target: 5'- gUCAACGCCACCAACGGCUUCCGCAAGu -3' miRNA: 3'- -AGUUGCGGUGGUUGCCGAAGGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 16324 | 0.66 | 0.748733 |
Target: 5'- aCAcCGCgACCAGCGGUcgCuCGCAu- -3' miRNA: 3'- aGUuGCGgUGGUUGCCGaaG-GCGUuc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 15959 | 0.66 | 0.727342 |
Target: 5'- cCAACGa-ACUAagcACGGCagaUCCGCAAGg -3' miRNA: 3'- aGUUGCggUGGU---UGCCGa--AGGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 13129 | 0.66 | 0.769631 |
Target: 5'- aCAA-GCCGCagAACGGCaUCCGCu-- -3' miRNA: 3'- aGUUgCGGUGg-UUGCCGaAGGCGuuc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 12812 | 0.79 | 0.159512 |
Target: 5'- cCGACGCCGCCAgcgaGCGGCUcagaagcCCGCAGa -3' miRNA: 3'- aGUUGCGGUGGU----UGCCGAa------GGCGUUc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 12697 | 0.69 | 0.605169 |
Target: 5'- aCAGgGCCAaCGGCGGCUU-CGCGAc -3' miRNA: 3'- aGUUgCGGUgGUUGCCGAAgGCGUUc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 12332 | 0.69 | 0.593997 |
Target: 5'- gUCAACGgCACCGuUGGCaaCCGCGu- -3' miRNA: 3'- -AGUUGCgGUGGUuGCCGaaGGCGUuc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 12075 | 0.67 | 0.683475 |
Target: 5'- cCGACaCCaACCugaccACGGCgucgggUCCGCAGGg -3' miRNA: 3'- aGUUGcGG-UGGu----UGCCGa-----AGGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 12069 | 0.69 | 0.593997 |
Target: 5'- gUCGAUGCCGugGAUGGCagCCGCGu- -3' miRNA: 3'- -AGUUGCGGUggUUGCCGaaGGCGUuc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 11867 | 0.66 | 0.779865 |
Target: 5'- aCGACGCCGa-GACGGCaccggUCCaGUggGg -3' miRNA: 3'- aGUUGCGGUggUUGCCGa----AGG-CGuuC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 10204 | 0.67 | 0.705558 |
Target: 5'- --uACGCCGCCcaacaGGCGGUgaucucgUCCGCGc- -3' miRNA: 3'- aguUGCGGUGG-----UUGCCGa------AGGCGUuc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 9665 | 0.69 | 0.571763 |
Target: 5'- -gGACGCCcUCGACGcGCUggaUCGCAAGg -3' miRNA: 3'- agUUGCGGuGGUUGC-CGAa--GGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 8645 | 0.68 | 0.648877 |
Target: 5'- aUUGACGCCGCCGucugcGCGGUccucgcgUUCggCGCGAGa -3' miRNA: 3'- -AGUUGCGGUGGU-----UGCCG-------AAG--GCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 6571 | 0.67 | 0.672351 |
Target: 5'- -gGGCaGCCugCAccacaggcuCGGCgaugUCCGCAAGg -3' miRNA: 3'- agUUG-CGGugGUu--------GCCGa---AGGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 6137 | 0.66 | 0.727342 |
Target: 5'- --uACGCCAaggcguaCGACGGCgggccgCUGCGAGu -3' miRNA: 3'- aguUGCGGUg------GUUGCCGaa----GGCGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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