miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18700 3' -53.9 NC_004682.1 + 21888 0.68 0.627575
Target:  5'- -gAACGCCACCAA-GGCgUUCaCGCu-- -3'
miRNA:   3'- agUUGCGGUGGUUgCCG-AAG-GCGuuc -5'
18700 3' -53.9 NC_004682.1 + 44731 0.71 0.485489
Target:  5'- cCGACGCCGCCggUGGCca-CGUAc- -3'
miRNA:   3'- aGUUGCGGUGGuuGCCGaagGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 26244 0.7 0.517213
Target:  5'- cUCggUGCCGuCC-GCGaGCUUCCGguGGg -3'
miRNA:   3'- -AGuuGCGGU-GGuUGC-CGAAGGCguUC- -5'
18700 3' -53.9 NC_004682.1 + 36560 0.69 0.560719
Target:  5'- ---uCGCCGCCcuGCGGCUUgCCGCc-- -3'
miRNA:   3'- aguuGCGGUGGu-UGCCGAA-GGCGuuc -5'
18700 3' -53.9 NC_004682.1 + 5116 0.69 0.560719
Target:  5'- gUCGACGCCgcGCCGAUccuGGCgcgugCUGCGGGc -3'
miRNA:   3'- -AGUUGCGG--UGGUUG---CCGaa---GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 9665 0.69 0.571763
Target:  5'- -gGACGCCcUCGACGcGCUggaUCGCAAGg -3'
miRNA:   3'- agUUGCGGuGGUUGC-CGAa--GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 24278 0.69 0.582859
Target:  5'- gCAACGCCGCCAagACGaGCUacgucuaCGCGAu -3'
miRNA:   3'- aGUUGCGGUGGU--UGC-CGAag-----GCGUUc -5'
18700 3' -53.9 NC_004682.1 + 12332 0.69 0.593997
Target:  5'- gUCAACGgCACCGuUGGCaaCCGCGu- -3'
miRNA:   3'- -AGUUGCgGUGGUuGCCGaaGGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 12697 0.69 0.605169
Target:  5'- aCAGgGCCAaCGGCGGCUU-CGCGAc -3'
miRNA:   3'- aGUUgCGGUgGUUGCCGAAgGCGUUc -5'
18700 3' -53.9 NC_004682.1 + 25000 0.71 0.454722
Target:  5'- aCGACGCCGacUCGGCGGCaUCUGCu-- -3'
miRNA:   3'- aGUUGCGGU--GGUUGCCGaAGGCGuuc -5'
18700 3' -53.9 NC_004682.1 + 17386 0.71 0.444702
Target:  5'- aCGGCGUCACCAAccuguucaccCGGCUcauggaguccggUCUGCAGGc -3'
miRNA:   3'- aGUUGCGGUGGUU----------GCCGA------------AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 5072 0.72 0.405907
Target:  5'- cCGACGCCGCac-CGGCUgcucCCGCAc- -3'
miRNA:   3'- aGUUGCGGUGguuGCCGAa---GGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 24143 0.82 0.098317
Target:  5'- aCAAgGUCGCCAACGGUgaCCGCGAGg -3'
miRNA:   3'- aGUUgCGGUGGUUGCCGaaGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 12812 0.79 0.159512
Target:  5'- cCGACGCCGCCAgcgaGCGGCUcagaagcCCGCAGa -3'
miRNA:   3'- aGUUGCGGUGGU----UGCCGAa------GGCGUUc -5'
18700 3' -53.9 NC_004682.1 + 33491 0.79 0.159512
Target:  5'- ---cCGCCGCCAGCGGCcugCUGCGGGg -3'
miRNA:   3'- aguuGCGGUGGUUGCCGaa-GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 21185 0.74 0.335038
Target:  5'- gUCGGCGCUACCuccACGGCgaagacCCGCAc- -3'
miRNA:   3'- -AGUUGCGGUGGu--UGCCGaa----GGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 4979 0.73 0.378245
Target:  5'- gUCuggauCGCCA-CAGCGGCUUccagCCGCAGGg -3'
miRNA:   3'- -AGuu---GCGGUgGUUGCCGAA----GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 28695 0.73 0.378245
Target:  5'- cCGAUGCCGCCcacucGCGGCggCgGCGGGa -3'
miRNA:   3'- aGUUGCGGUGGu----UGCCGaaGgCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 37250 0.72 0.396545
Target:  5'- -gGAUGCCGCC-ACGGUggCCGUggGu -3'
miRNA:   3'- agUUGCGGUGGuUGCCGaaGGCGuuC- -5'
18700 3' -53.9 NC_004682.1 + 17117 0.72 0.405907
Target:  5'- -aGGCGUCACCGACgcacuGGCUUCCggcGCGGGu -3'
miRNA:   3'- agUUGCGGUGGUUG-----CCGAAGG---CGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.