miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18700 3' -53.9 NC_004682.1 + 12069 0.69 0.593997
Target:  5'- gUCGAUGCCGugGAUGGCagCCGCGu- -3'
miRNA:   3'- -AGUUGCGGUggUUGCCGaaGGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 27497 0.69 0.593997
Target:  5'- -gAACGCCagugcGCCGACGGCgauugugCCGCc-- -3'
miRNA:   3'- agUUGCGG-----UGGUUGCCGaa-----GGCGuuc -5'
18700 3' -53.9 NC_004682.1 + 43986 0.69 0.593997
Target:  5'- ----aGCCGCC--UGGCUcCCGCAGGg -3'
miRNA:   3'- aguugCGGUGGuuGCCGAaGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 36643 0.69 0.582859
Target:  5'- aCGACuCCGaCGGCGGCaagCCGCAGGg -3'
miRNA:   3'- aGUUGcGGUgGUUGCCGaa-GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 46453 0.69 0.582859
Target:  5'- -gAGCGCgCugCucUGGCUcUCCGCGAGg -3'
miRNA:   3'- agUUGCG-GugGuuGCCGA-AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 27645 0.69 0.560719
Target:  5'- -aGGCGa-ACCAGCGGCUcugCCGCAGc -3'
miRNA:   3'- agUUGCggUGGUUGCCGAa--GGCGUUc -5'
18700 3' -53.9 NC_004682.1 + 34976 0.7 0.506541
Target:  5'- -gAugGUCGCCAACGGCgagCCGgGGu -3'
miRNA:   3'- agUugCGGUGGUUGCCGaa-GGCgUUc -5'
18700 3' -53.9 NC_004682.1 + 44132 0.7 0.495964
Target:  5'- cCAcCGCCugCGGCGGCUUCacaacauCAAGg -3'
miRNA:   3'- aGUuGCGGugGUUGCCGAAGgc-----GUUC- -5'
18700 3' -53.9 NC_004682.1 + 49661 0.67 0.694548
Target:  5'- uUCAACuggGCCgagacGCUGACGGUggUUCGCAAGg -3'
miRNA:   3'- -AGUUG---CGG-----UGGUUGCCGa-AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 33871 0.67 0.694548
Target:  5'- aCGACGagGCCcaGGCGGCUcCCGcCGAGg -3'
miRNA:   3'- aGUUGCggUGG--UUGCCGAaGGC-GUUC- -5'
18700 3' -53.9 NC_004682.1 + 36029 0.66 0.779865
Target:  5'- -gAACGCcucauguaCugCGGCGGCgaggCCGCAAa -3'
miRNA:   3'- agUUGCG--------GugGUUGCCGaa--GGCGUUc -5'
18700 3' -53.9 NC_004682.1 + 28773 0.66 0.778849
Target:  5'- cCGcCGCCGCCGcgaguggGCGGCaUCgGCAc- -3'
miRNA:   3'- aGUuGCGGUGGU-------UGCCGaAGgCGUuc -5'
18700 3' -53.9 NC_004682.1 + 13129 0.66 0.769631
Target:  5'- aCAA-GCCGCagAACGGCaUCCGCu-- -3'
miRNA:   3'- aGUUgCGGUGg-UUGCCGaAGGCGuuc -5'
18700 3' -53.9 NC_004682.1 + 26731 0.66 0.759249
Target:  5'- gCGAaGCUGCuCGACGGCUggucguucaUCCGCAu- -3'
miRNA:   3'- aGUUgCGGUG-GUUGCCGA---------AGGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 49265 0.66 0.759249
Target:  5'- aCAugGCCAgCCucaAGCGGagcaaugaCCGCAAGg -3'
miRNA:   3'- aGUugCGGU-GG---UUGCCgaa-----GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 26265 0.66 0.758204
Target:  5'- -gGACGCCGCucaacugCAACGGCaUCUcgauGCGGGg -3'
miRNA:   3'- agUUGCGGUG-------GUUGCCGaAGG----CGUUC- -5'
18700 3' -53.9 NC_004682.1 + 16324 0.66 0.748733
Target:  5'- aCAcCGCgACCAGCGGUcgCuCGCAu- -3'
miRNA:   3'- aGUuGCGgUGGUUGCCGaaG-GCGUuc -5'
18700 3' -53.9 NC_004682.1 + 33795 0.66 0.748733
Target:  5'- -gAAgGCCccgGCCAagGCGGCUcCCGcCAAGg -3'
miRNA:   3'- agUUgCGG---UGGU--UGCCGAaGGC-GUUC- -5'
18700 3' -53.9 NC_004682.1 + 27465 0.66 0.723014
Target:  5'- cCGugGCCACCcguacCGGCgauagaauccucaUCUGCAAGu -3'
miRNA:   3'- aGUugCGGUGGuu---GCCGa------------AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 41611 0.67 0.705558
Target:  5'- aCAACGUgACCAACG---UCCGCAc- -3'
miRNA:   3'- aGUUGCGgUGGUUGCcgaAGGCGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.