miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18700 3' -53.9 NC_004682.1 + 16324 0.66 0.748733
Target:  5'- aCAcCGCgACCAGCGGUcgCuCGCAu- -3'
miRNA:   3'- aGUuGCGgUGGUUGCCGaaG-GCGUuc -5'
18700 3' -53.9 NC_004682.1 + 41016 0.72 0.396545
Target:  5'- gUCGAgcgaGCCGCCaAGCGGUggaUUCCGUGAGg -3'
miRNA:   3'- -AGUUg---CGGUGG-UUGCCG---AAGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 36643 0.69 0.582859
Target:  5'- aCGACuCCGaCGGCGGCaagCCGCAGGg -3'
miRNA:   3'- aGUUGcGGUgGUUGCCGaa-GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 26265 0.66 0.758204
Target:  5'- -gGACGCCGCucaacugCAACGGCaUCUcgauGCGGGg -3'
miRNA:   3'- agUUGCGGUG-------GUUGCCGaAGG----CGUUC- -5'
18700 3' -53.9 NC_004682.1 + 44132 0.7 0.495964
Target:  5'- cCAcCGCCugCGGCGGCUUCacaacauCAAGg -3'
miRNA:   3'- aGUuGCGGugGUUGCCGAAGgc-----GUUC- -5'
18700 3' -53.9 NC_004682.1 + 29321 0.74 0.335038
Target:  5'- uUCAuCGCCGCCGuccACGGCUgUCuCGCAGa -3'
miRNA:   3'- -AGUuGCGGUGGU---UGCCGA-AG-GCGUUc -5'
18700 3' -53.9 NC_004682.1 + 39481 0.71 0.434807
Target:  5'- aUCuuCGCCACCuACGGCaucaCCGcCGAGg -3'
miRNA:   3'- -AGuuGCGGUGGuUGCCGaa--GGC-GUUC- -5'
18700 3' -53.9 NC_004682.1 + 49265 0.66 0.759249
Target:  5'- aCAugGCCAgCCucaAGCGGagcaaugaCCGCAAGg -3'
miRNA:   3'- aGUugCGGU-GG---UUGCCgaa-----GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 26731 0.66 0.759249
Target:  5'- gCGAaGCUGCuCGACGGCUggucguucaUCCGCAu- -3'
miRNA:   3'- aGUUgCGGUG-GUUGCCGA---------AGGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 33795 0.66 0.748733
Target:  5'- -gAAgGCCccgGCCAagGCGGCUcCCGcCAAGg -3'
miRNA:   3'- agUUgCGG---UGGU--UGCCGAaGGC-GUUC- -5'
18700 3' -53.9 NC_004682.1 + 21006 0.68 0.661189
Target:  5'- aCAGCGUCAgCAGCaGGCaccacUUCGCAGGc -3'
miRNA:   3'- aGUUGCGGUgGUUG-CCGa----AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 28695 0.73 0.378245
Target:  5'- cCGAUGCCGCCcacucGCGGCggCgGCGGGa -3'
miRNA:   3'- aGUUGCGGUGGu----UGCCGaaGgCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 30252 0.67 0.716494
Target:  5'- aUCAGCGCCuCCc-CGGUcacgUCGCGAGa -3'
miRNA:   3'- -AGUUGCGGuGGuuGCCGaa--GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 20768 0.67 0.716494
Target:  5'- uUCAugGaUCACUAcCGGgUggUCCGCGAGg -3'
miRNA:   3'- -AGUugC-GGUGGUuGCCgA--AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 10204 0.67 0.705558
Target:  5'- --uACGCCGCCcaacaGGCGGUgaucucgUCCGCGc- -3'
miRNA:   3'- aguUGCGGUGG-----UUGCCGa------AGGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 12075 0.67 0.683475
Target:  5'- cCGACaCCaACCugaccACGGCgucgggUCCGCAGGg -3'
miRNA:   3'- aGUUGcGG-UGGu----UGCCGa-----AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 6072 0.67 0.683475
Target:  5'- aCGACGCCaauACCGGCGgGCUggugagCCGUuGGc -3'
miRNA:   3'- aGUUGCGG---UGGUUGC-CGAa-----GGCGuUC- -5'
18700 3' -53.9 NC_004682.1 + 44731 0.71 0.485489
Target:  5'- cCGACGCCGCCggUGGCca-CGUAc- -3'
miRNA:   3'- aGUUGCGGUGGuuGCCGaagGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 26244 0.7 0.517213
Target:  5'- cUCggUGCCGuCC-GCGaGCUUCCGguGGg -3'
miRNA:   3'- -AGuuGCGGU-GGuUGC-CGAAGGCguUC- -5'
18700 3' -53.9 NC_004682.1 + 36560 0.69 0.560719
Target:  5'- ---uCGCCGCCcuGCGGCUUgCCGCc-- -3'
miRNA:   3'- aguuGCGGUGGu-UGCCGAA-GGCGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.