Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18700 | 3' | -53.9 | NC_004682.1 | + | 12812 | 0.79 | 0.159512 |
Target: 5'- cCGACGCCGCCAgcgaGCGGCUcagaagcCCGCAGa -3' miRNA: 3'- aGUUGCGGUGGU----UGCCGAa------GGCGUUc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 4979 | 0.73 | 0.378245 |
Target: 5'- gUCuggauCGCCA-CAGCGGCUUccagCCGCAGGg -3' miRNA: 3'- -AGuu---GCGGUgGUUGCCGAA----GGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 21185 | 0.74 | 0.335038 |
Target: 5'- gUCGGCGCUACCuccACGGCgaagacCCGCAc- -3' miRNA: 3'- -AGUUGCGGUGGu--UGCCGaa----GGCGUuc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 9665 | 0.69 | 0.571763 |
Target: 5'- -gGACGCCcUCGACGcGCUggaUCGCAAGg -3' miRNA: 3'- agUUGCGGuGGUUGC-CGAa--GGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 24278 | 0.69 | 0.582859 |
Target: 5'- gCAACGCCGCCAagACGaGCUacgucuaCGCGAu -3' miRNA: 3'- aGUUGCGGUGGU--UGC-CGAag-----GCGUUc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 12075 | 0.67 | 0.683475 |
Target: 5'- cCGACaCCaACCugaccACGGCgucgggUCCGCAGGg -3' miRNA: 3'- aGUUGcGG-UGGu----UGCCGa-----AGGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 10204 | 0.67 | 0.705558 |
Target: 5'- --uACGCCGCCcaacaGGCGGUgaucucgUCCGCGc- -3' miRNA: 3'- aguUGCGGUGG-----UUGCCGa------AGGCGUuc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 20768 | 0.67 | 0.716494 |
Target: 5'- uUCAugGaUCACUAcCGGgUggUCCGCGAGg -3' miRNA: 3'- -AGUugC-GGUGGUuGCCgA--AGGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 30252 | 0.67 | 0.716494 |
Target: 5'- aUCAGCGCCuCCc-CGGUcacgUCGCGAGa -3' miRNA: 3'- -AGUUGCGGuGGuuGCCGaa--GGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 6571 | 0.67 | 0.672351 |
Target: 5'- -gGGCaGCCugCAccacaggcuCGGCgaugUCCGCAAGg -3' miRNA: 3'- agUUG-CGGugGUu--------GCCGa---AGGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 42537 | 0.68 | 0.627575 |
Target: 5'- cCGACGUgGCuCGGCGGCgccUCUGCGGc -3' miRNA: 3'- aGUUGCGgUG-GUUGCCGa--AGGCGUUc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 33449 | 0.66 | 0.748733 |
Target: 5'- uUCGACugccucuggguGCCACCAcccCGGCUgCCGCc-- -3' miRNA: 3'- -AGUUG-----------CGGUGGUu--GCCGAaGGCGuuc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 27871 | 0.66 | 0.759249 |
Target: 5'- -gAAgGCCAgCCcgGAgGGCUUCCGCuAGu -3' miRNA: 3'- agUUgCGGU-GG--UUgCCGAAGGCGuUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 31224 | 0.66 | 0.779865 |
Target: 5'- cCGcCGgCACCAGCGggaucaGCUUCUGCAGc -3' miRNA: 3'- aGUuGCgGUGGUUGC------CGAAGGCGUUc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 41271 | 0.66 | 0.78088 |
Target: 5'- cCGACcgGCCACC-ACGGUUcuucaccguggagacCCGCAGGg -3' miRNA: 3'- aGUUG--CGGUGGuUGCCGAa--------------GGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 8645 | 0.68 | 0.648877 |
Target: 5'- aUUGACGCCGCCGucugcGCGGUccucgcgUUCggCGCGAGa -3' miRNA: 3'- -AGUUGCGGUGGU-----UGCCG-------AAG--GCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 1452 | 0.68 | 0.627575 |
Target: 5'- cUCGACGCCAgCGGCGaGCccgucaacUUCCcgGCAGGc -3' miRNA: 3'- -AGUUGCGGUgGUUGC-CG--------AAGG--CGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 21888 | 0.68 | 0.627575 |
Target: 5'- -gAACGCCACCAA-GGCgUUCaCGCu-- -3' miRNA: 3'- agUUGCGGUGGUUgCCG-AAG-GCGuuc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 12697 | 0.69 | 0.605169 |
Target: 5'- aCAGgGCCAaCGGCGGCUU-CGCGAc -3' miRNA: 3'- aGUUgCGGUgGUUGCCGAAgGCGUUc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 12332 | 0.69 | 0.593997 |
Target: 5'- gUCAACGgCACCGuUGGCaaCCGCGu- -3' miRNA: 3'- -AGUUGCgGUGGUuGCCGaaGGCGUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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