Results 61 - 68 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18700 | 3' | -53.9 | NC_004682.1 | + | 6072 | 0.67 | 0.683475 |
Target: 5'- aCGACGCCaauACCGGCGgGCUggugagCCGUuGGc -3' miRNA: 3'- aGUUGCGG---UGGUUGC-CGAa-----GGCGuUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 6571 | 0.67 | 0.672351 |
Target: 5'- -gGGCaGCCugCAccacaggcuCGGCgaugUCCGCAAGg -3' miRNA: 3'- agUUG-CGGugGUu--------GCCGa---AGGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 8645 | 0.68 | 0.648877 |
Target: 5'- aUUGACGCCGCCGucugcGCGGUccucgcgUUCggCGCGAGa -3' miRNA: 3'- -AGUUGCGGUGGU-----UGCCG-------AAG--GCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 42537 | 0.68 | 0.627575 |
Target: 5'- cCGACGUgGCuCGGCGGCgccUCUGCGGc -3' miRNA: 3'- aGUUGCGgUG-GUUGCCGa--AGGCGUUc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 1452 | 0.68 | 0.627575 |
Target: 5'- cUCGACGCCAgCGGCGaGCccgucaacUUCCcgGCAGGc -3' miRNA: 3'- -AGUUGCGGUgGUUGC-CG--------AAGG--CGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 21888 | 0.68 | 0.627575 |
Target: 5'- -gAACGCCACCAA-GGCgUUCaCGCu-- -3' miRNA: 3'- agUUGCGGUGGUUgCCG-AAG-GCGuuc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 12697 | 0.69 | 0.605169 |
Target: 5'- aCAGgGCCAaCGGCGGCUU-CGCGAc -3' miRNA: 3'- aGUUgCGGUgGUUGCCGAAgGCGUUc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 16624 | 1.09 | 0.001207 |
Target: 5'- gUCAACGCCACCAACGGCUUCCGCAAGu -3' miRNA: 3'- -AGUUGCGGUGGUUGCCGAAGGCGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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