miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18700 5' -63.5 NC_004682.1 + 33571 0.66 0.313752
Target:  5'- aGCUGgcccCGCaGCAgGcCGCUgGcGGCGGCa -3'
miRNA:   3'- gCGAC----GCGcCGUaC-GCGAgC-CCGCCG- -5'
18700 5' -63.5 NC_004682.1 + 5440 0.66 0.306435
Target:  5'- cCGCgUGCGCuGGCcgaucugaaGUGgGCcggcaUCGGcGCGGCc -3'
miRNA:   3'- -GCG-ACGCG-CCG---------UACgCG-----AGCC-CGCCG- -5'
18700 5' -63.5 NC_004682.1 + 43096 0.66 0.306435
Target:  5'- aCGCUGUGCGcGUAcgGC-CUUGcGGUGGUc -3'
miRNA:   3'- -GCGACGCGC-CGUa-CGcGAGC-CCGCCG- -5'
18700 5' -63.5 NC_004682.1 + 25584 0.66 0.306435
Target:  5'- gGCUGa--GGUGUGUGCgCuGGCGGCu -3'
miRNA:   3'- gCGACgcgCCGUACGCGaGcCCGCCG- -5'
18700 5' -63.5 NC_004682.1 + 2963 0.66 0.306435
Target:  5'- gCGC-GgGCGGCG-GCGCU-GGGCaGUg -3'
miRNA:   3'- -GCGaCgCGCCGUaCGCGAgCCCGcCG- -5'
18700 5' -63.5 NC_004682.1 + 17997 0.66 0.292197
Target:  5'- uCGU--UGCGGCcuuCGCUCaGGCGGCa -3'
miRNA:   3'- -GCGacGCGCCGuacGCGAGcCCGCCG- -5'
18700 5' -63.5 NC_004682.1 + 4938 0.66 0.288027
Target:  5'- uCGCgUGCaUGGgcuacgacgacacccCcgGUGCUCGGGCGGUc -3'
miRNA:   3'- -GCG-ACGcGCC---------------GuaCGCGAGCCCGCCG- -5'
18700 5' -63.5 NC_004682.1 + 12877 0.67 0.258876
Target:  5'- uCGCUG-GCGGCGUcggggggauCGCUUGGGggaGGCc -3'
miRNA:   3'- -GCGACgCGCCGUAc--------GCGAGCCCg--CCG- -5'
18700 5' -63.5 NC_004682.1 + 46349 0.67 0.258876
Target:  5'- cCGCaaCGCcGCGUuCGCUCGGGCgcuGGCg -3'
miRNA:   3'- -GCGacGCGcCGUAcGCGAGCCCG---CCG- -5'
18700 5' -63.5 NC_004682.1 + 37299 0.67 0.246441
Target:  5'- gGCUGaaccagaaCGCgGGCAgcacgGCcCUCGGcGCGGCg -3'
miRNA:   3'- gCGAC--------GCG-CCGUa----CGcGAGCC-CGCCG- -5'
18700 5' -63.5 NC_004682.1 + 40422 0.67 0.246441
Target:  5'- gGCUuCGCGGUgaccGCGCUCGacGCGGUg -3'
miRNA:   3'- gCGAcGCGCCGua--CGCGAGCc-CGCCG- -5'
18700 5' -63.5 NC_004682.1 + 34704 0.68 0.234507
Target:  5'- uCGCaaccgGCGCaucGGCGUGgGCcaccUCGGcGUGGCg -3'
miRNA:   3'- -GCGa----CGCG---CCGUACgCG----AGCC-CGCCG- -5'
18700 5' -63.5 NC_004682.1 + 41951 0.68 0.228723
Target:  5'- -cCUGCGCGGCca--GCUCGcGCGGUc -3'
miRNA:   3'- gcGACGCGCCGuacgCGAGCcCGCCG- -5'
18700 5' -63.5 NC_004682.1 + 40685 0.68 0.223061
Target:  5'- aGCgucgGCacGCGGCAcUGCaugGCUCGGGCcaucgccgccGGCa -3'
miRNA:   3'- gCGa---CG--CGCCGU-ACG---CGAGCCCG----------CCG- -5'
18700 5' -63.5 NC_004682.1 + 2081 0.68 0.217518
Target:  5'- gGgUGCGCcGUcgGC-CUCGGGgGGCc -3'
miRNA:   3'- gCgACGCGcCGuaCGcGAGCCCgCCG- -5'
18700 5' -63.5 NC_004682.1 + 4892 0.68 0.212094
Target:  5'- gGCUcgGUGaGCccGCGCuacUCGGGCGGCa -3'
miRNA:   3'- gCGAcgCGC-CGuaCGCG---AGCCCGCCG- -5'
18700 5' -63.5 NC_004682.1 + 30813 0.69 0.181944
Target:  5'- aCGCUGCccaGCGGCGacUG-GCU-GGuGCGGCg -3'
miRNA:   3'- -GCGACG---CGCCGU--ACgCGAgCC-CGCCG- -5'
18700 5' -63.5 NC_004682.1 + 8655 0.69 0.177304
Target:  5'- cCGuCUGCGCGGUccucGCGUUCGGcGCGa- -3'
miRNA:   3'- -GC-GACGCGCCGua--CGCGAGCC-CGCcg -5'
18700 5' -63.5 NC_004682.1 + 39913 0.71 0.125953
Target:  5'- cCGUU-CGCGGCuggcaagaGCGCagccgaggcaUCGGGCGGCg -3'
miRNA:   3'- -GCGAcGCGCCGua------CGCG----------AGCCCGCCG- -5'
18700 5' -63.5 NC_004682.1 + 31970 0.72 0.109557
Target:  5'- uCGCcaugaagGCGaCGGCcaucuggaccgGCuGCUCGGGCGGCg -3'
miRNA:   3'- -GCGa------CGC-GCCGua---------CG-CGAGCCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.