Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18700 | 5' | -63.5 | NC_004682.1 | + | 5440 | 0.66 | 0.306435 |
Target: 5'- cCGCgUGCGCuGGCcgaucugaaGUGgGCcggcaUCGGcGCGGCc -3' miRNA: 3'- -GCG-ACGCG-CCG---------UACgCG-----AGCC-CGCCG- -5' |
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18700 | 5' | -63.5 | NC_004682.1 | + | 33571 | 0.66 | 0.313752 |
Target: 5'- aGCUGgcccCGCaGCAgGcCGCUgGcGGCGGCa -3' miRNA: 3'- gCGAC----GCGcCGUaC-GCGAgC-CCGCCG- -5' |
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18700 | 5' | -63.5 | NC_004682.1 | + | 43096 | 0.66 | 0.306435 |
Target: 5'- aCGCUGUGCGcGUAcgGC-CUUGcGGUGGUc -3' miRNA: 3'- -GCGACGCGC-CGUa-CGcGAGC-CCGCCG- -5' |
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18700 | 5' | -63.5 | NC_004682.1 | + | 25584 | 0.66 | 0.306435 |
Target: 5'- gGCUGa--GGUGUGUGCgCuGGCGGCu -3' miRNA: 3'- gCGACgcgCCGUACGCGaGcCCGCCG- -5' |
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18700 | 5' | -63.5 | NC_004682.1 | + | 2963 | 0.66 | 0.306435 |
Target: 5'- gCGC-GgGCGGCG-GCGCU-GGGCaGUg -3' miRNA: 3'- -GCGaCgCGCCGUaCGCGAgCCCGcCG- -5' |
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18700 | 5' | -63.5 | NC_004682.1 | + | 17997 | 0.66 | 0.292197 |
Target: 5'- uCGU--UGCGGCcuuCGCUCaGGCGGCa -3' miRNA: 3'- -GCGacGCGCCGuacGCGAGcCCGCCG- -5' |
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18700 | 5' | -63.5 | NC_004682.1 | + | 4938 | 0.66 | 0.288027 |
Target: 5'- uCGCgUGCaUGGgcuacgacgacacccCcgGUGCUCGGGCGGUc -3' miRNA: 3'- -GCG-ACGcGCC---------------GuaCGCGAGCCCGCCG- -5' |
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18700 | 5' | -63.5 | NC_004682.1 | + | 37299 | 0.67 | 0.246441 |
Target: 5'- gGCUGaaccagaaCGCgGGCAgcacgGCcCUCGGcGCGGCg -3' miRNA: 3'- gCGAC--------GCG-CCGUa----CGcGAGCC-CGCCG- -5' |
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18700 | 5' | -63.5 | NC_004682.1 | + | 40422 | 0.67 | 0.246441 |
Target: 5'- gGCUuCGCGGUgaccGCGCUCGacGCGGUg -3' miRNA: 3'- gCGAcGCGCCGua--CGCGAGCc-CGCCG- -5' |
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18700 | 5' | -63.5 | NC_004682.1 | + | 12877 | 0.67 | 0.258876 |
Target: 5'- uCGCUG-GCGGCGUcggggggauCGCUUGGGggaGGCc -3' miRNA: 3'- -GCGACgCGCCGUAc--------GCGAGCCCg--CCG- -5' |
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18700 | 5' | -63.5 | NC_004682.1 | + | 46349 | 0.67 | 0.258876 |
Target: 5'- cCGCaaCGCcGCGUuCGCUCGGGCgcuGGCg -3' miRNA: 3'- -GCGacGCGcCGUAcGCGAGCCCG---CCG- -5' |
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18700 | 5' | -63.5 | NC_004682.1 | + | 34704 | 0.68 | 0.234507 |
Target: 5'- uCGCaaccgGCGCaucGGCGUGgGCcaccUCGGcGUGGCg -3' miRNA: 3'- -GCGa----CGCG---CCGUACgCG----AGCC-CGCCG- -5' |
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18700 | 5' | -63.5 | NC_004682.1 | + | 41951 | 0.68 | 0.228723 |
Target: 5'- -cCUGCGCGGCca--GCUCGcGCGGUc -3' miRNA: 3'- gcGACGCGCCGuacgCGAGCcCGCCG- -5' |
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18700 | 5' | -63.5 | NC_004682.1 | + | 40685 | 0.68 | 0.223061 |
Target: 5'- aGCgucgGCacGCGGCAcUGCaugGCUCGGGCcaucgccgccGGCa -3' miRNA: 3'- gCGa---CG--CGCCGU-ACG---CGAGCCCG----------CCG- -5' |
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18700 | 5' | -63.5 | NC_004682.1 | + | 2081 | 0.68 | 0.217518 |
Target: 5'- gGgUGCGCcGUcgGC-CUCGGGgGGCc -3' miRNA: 3'- gCgACGCGcCGuaCGcGAGCCCgCCG- -5' |
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18700 | 5' | -63.5 | NC_004682.1 | + | 4892 | 0.68 | 0.212094 |
Target: 5'- gGCUcgGUGaGCccGCGCuacUCGGGCGGCa -3' miRNA: 3'- gCGAcgCGC-CGuaCGCG---AGCCCGCCG- -5' |
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18700 | 5' | -63.5 | NC_004682.1 | + | 8655 | 0.69 | 0.177304 |
Target: 5'- cCGuCUGCGCGGUccucGCGUUCGGcGCGa- -3' miRNA: 3'- -GC-GACGCGCCGua--CGCGAGCC-CGCcg -5' |
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18700 | 5' | -63.5 | NC_004682.1 | + | 30813 | 0.69 | 0.181944 |
Target: 5'- aCGCUGCccaGCGGCGacUG-GCU-GGuGCGGCg -3' miRNA: 3'- -GCGACG---CGCCGU--ACgCGAgCC-CGCCG- -5' |
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18700 | 5' | -63.5 | NC_004682.1 | + | 39913 | 0.71 | 0.125953 |
Target: 5'- cCGUU-CGCGGCuggcaagaGCGCagccgaggcaUCGGGCGGCg -3' miRNA: 3'- -GCGAcGCGCCGua------CGCG----------AGCCCGCCG- -5' |
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18700 | 5' | -63.5 | NC_004682.1 | + | 31970 | 0.72 | 0.109557 |
Target: 5'- uCGCcaugaagGCGaCGGCcaucuggaccgGCuGCUCGGGCGGCg -3' miRNA: 3'- -GCGa------CGC-GCCGua---------CG-CGAGCCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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