miRNA display CGI


Results 21 - 23 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18700 5' -63.5 NC_004682.1 + 2963 0.66 0.306435
Target:  5'- gCGC-GgGCGGCG-GCGCU-GGGCaGUg -3'
miRNA:   3'- -GCGaCgCGCCGUaCGCGAgCCCGcCG- -5'
18700 5' -63.5 NC_004682.1 + 43096 0.66 0.306435
Target:  5'- aCGCUGUGCGcGUAcgGC-CUUGcGGUGGUc -3'
miRNA:   3'- -GCGACGCGC-CGUa-CGcGAGC-CCGCCG- -5'
18700 5' -63.5 NC_004682.1 + 33571 0.66 0.313752
Target:  5'- aGCUGgcccCGCaGCAgGcCGCUgGcGGCGGCa -3'
miRNA:   3'- gCGAC----GCGcCGUaC-GCGAgC-CCGCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.