miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18701 5' -59.4 NC_004682.1 + 26470 0.66 0.467555
Target:  5'- cCGACGUUcGACC-CGGCGacgUGgaAGCAGa -3'
miRNA:   3'- -GCUGCGA-CUGGuGCCGCg--ACg-UCGUC- -5'
18701 5' -59.4 NC_004682.1 + 2909 0.66 0.467555
Target:  5'- uCG-UGUUGGgCAgCGGCGCgUGCGGCAa -3'
miRNA:   3'- -GCuGCGACUgGU-GCCGCG-ACGUCGUc -5'
18701 5' -59.4 NC_004682.1 + 21018 0.66 0.457735
Target:  5'- gGAUGUUGACgaACaGCGUcaGCAGCAGg -3'
miRNA:   3'- gCUGCGACUGg-UGcCGCGa-CGUCGUC- -5'
18701 5' -59.4 NC_004682.1 + 30491 0.67 0.428959
Target:  5'- uCGACgGCUucGACCGggccuacccCGGCG-UGCAGCGGc -3'
miRNA:   3'- -GCUG-CGA--CUGGU---------GCCGCgACGUCGUC- -5'
18701 5' -59.4 NC_004682.1 + 18124 0.67 0.410378
Target:  5'- gGGCGCgucgGACauCGCGGCcaagGCGGCAGa -3'
miRNA:   3'- gCUGCGa---CUG--GUGCCGcga-CGUCGUC- -5'
18701 5' -59.4 NC_004682.1 + 24354 0.67 0.409462
Target:  5'- aGACGUa-GCUcgucuugGCGGCGUUGCAGCGu -3'
miRNA:   3'- gCUGCGacUGG-------UGCCGCGACGUCGUc -5'
18701 5' -59.4 NC_004682.1 + 5117 0.67 0.401276
Target:  5'- uCGACGCcGcGCCGauccUGGCGCgUGCuGCGGg -3'
miRNA:   3'- -GCUGCGaC-UGGU----GCCGCG-ACGuCGUC- -5'
18701 5' -59.4 NC_004682.1 + 16658 0.67 0.401276
Target:  5'- aGGCGCUG--CGCGGCauGCgcucggGCGGCAGc -3'
miRNA:   3'- gCUGCGACugGUGCCG--CGa-----CGUCGUC- -5'
18701 5' -59.4 NC_004682.1 + 37615 0.67 0.392305
Target:  5'- cCGACGCcGGCC-CGGUGgaGCAaggGCAc -3'
miRNA:   3'- -GCUGCGaCUGGuGCCGCgaCGU---CGUc -5'
18701 5' -59.4 NC_004682.1 + 29742 0.67 0.383465
Target:  5'- gGAgGCUcaggagauccucGACCACcugguGGCGCUGaAGCAGg -3'
miRNA:   3'- gCUgCGA------------CUGGUG-----CCGCGACgUCGUC- -5'
18701 5' -59.4 NC_004682.1 + 12075 0.68 0.366186
Target:  5'- cCGACaccaacCUGACCACGGCGUcggGUccGCAGg -3'
miRNA:   3'- -GCUGc-----GACUGGUGCCGCGa--CGu-CGUC- -5'
18701 5' -59.4 NC_004682.1 + 28101 0.68 0.349451
Target:  5'- gCGugGCUGcUCGCGGCGgCgagcGCGGaCAGa -3'
miRNA:   3'- -GCugCGACuGGUGCCGC-Ga---CGUC-GUC- -5'
18701 5' -59.4 NC_004682.1 + 14288 0.68 0.34129
Target:  5'- uGACGUUGACCAuCGGgaaCG-UGCGGUAGu -3'
miRNA:   3'- gCUGCGACUGGU-GCC---GCgACGUCGUC- -5'
18701 5' -59.4 NC_004682.1 + 27676 0.68 0.34129
Target:  5'- uCGAUGgUGAUCGCGGCgaucccgccGCUGUGGCu- -3'
miRNA:   3'- -GCUGCgACUGGUGCCG---------CGACGUCGuc -5'
18701 5' -59.4 NC_004682.1 + 42537 0.68 0.333268
Target:  5'- cCGACG-UGGCUcgGCGGCGCcucUGCGGCc- -3'
miRNA:   3'- -GCUGCgACUGG--UGCCGCG---ACGUCGuc -5'
18701 5' -59.4 NC_004682.1 + 24031 0.69 0.325385
Target:  5'- uGAaGCUG--CugGGCGCUGguGCGGa -3'
miRNA:   3'- gCUgCGACugGugCCGCGACguCGUC- -5'
18701 5' -59.4 NC_004682.1 + 12190 0.69 0.325385
Target:  5'- gGGCGUuguUGACCGCcagguaGGCGUUGCccuGCGGa -3'
miRNA:   3'- gCUGCG---ACUGGUG------CCGCGACGu--CGUC- -5'
18701 5' -59.4 NC_004682.1 + 16898 0.69 0.288061
Target:  5'- uCGGCGCguucgGugCcgguguCGGCGCUGUGGCGc -3'
miRNA:   3'- -GCUGCGa----CugGu-----GCCGCGACGUCGUc -5'
18701 5' -59.4 NC_004682.1 + 24521 0.7 0.281012
Target:  5'- uCGGCGCgGACUAcCGGgGCUGgGGCu- -3'
miRNA:   3'- -GCUGCGaCUGGU-GCCgCGACgUCGuc -5'
18701 5' -59.4 NC_004682.1 + 5176 0.7 0.254186
Target:  5'- gCGGCGUcGACCACGGgGgUcGguGCGGg -3'
miRNA:   3'- -GCUGCGaCUGGUGCCgCgA-CguCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.