Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18701 | 5' | -59.4 | NC_004682.1 | + | 17691 | 1.09 | 0.000328 |
Target: 5'- aCGACGCUGACCACGGCGCUGCAGCAGa -3' miRNA: 3'- -GCUGCGACUGGUGCCGCGACGUCGUC- -5' |
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18701 | 5' | -59.4 | NC_004682.1 | + | 2909 | 0.66 | 0.467555 |
Target: 5'- uCG-UGUUGGgCAgCGGCGCgUGCGGCAa -3' miRNA: 3'- -GCuGCGACUgGU-GCCGCG-ACGUCGUc -5' |
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18701 | 5' | -59.4 | NC_004682.1 | + | 18124 | 0.67 | 0.410378 |
Target: 5'- gGGCGCgucgGACauCGCGGCcaagGCGGCAGa -3' miRNA: 3'- gCUGCGa---CUG--GUGCCGcga-CGUCGUC- -5' |
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18701 | 5' | -59.4 | NC_004682.1 | + | 5117 | 0.67 | 0.401276 |
Target: 5'- uCGACGCcGcGCCGauccUGGCGCgUGCuGCGGg -3' miRNA: 3'- -GCUGCGaC-UGGU----GCCGCG-ACGuCGUC- -5' |
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18701 | 5' | -59.4 | NC_004682.1 | + | 16658 | 0.67 | 0.401276 |
Target: 5'- aGGCGCUG--CGCGGCauGCgcucggGCGGCAGc -3' miRNA: 3'- gCUGCGACugGUGCCG--CGa-----CGUCGUC- -5' |
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18701 | 5' | -59.4 | NC_004682.1 | + | 12075 | 0.68 | 0.366186 |
Target: 5'- cCGACaccaacCUGACCACGGCGUcggGUccGCAGg -3' miRNA: 3'- -GCUGc-----GACUGGUGCCGCGa--CGu-CGUC- -5' |
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18701 | 5' | -59.4 | NC_004682.1 | + | 28101 | 0.68 | 0.349451 |
Target: 5'- gCGugGCUGcUCGCGGCGgCgagcGCGGaCAGa -3' miRNA: 3'- -GCugCGACuGGUGCCGC-Ga---CGUC-GUC- -5' |
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18701 | 5' | -59.4 | NC_004682.1 | + | 27676 | 0.68 | 0.34129 |
Target: 5'- uCGAUGgUGAUCGCGGCgaucccgccGCUGUGGCu- -3' miRNA: 3'- -GCUGCgACUGGUGCCG---------CGACGUCGuc -5' |
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18701 | 5' | -59.4 | NC_004682.1 | + | 42537 | 0.68 | 0.333268 |
Target: 5'- cCGACG-UGGCUcgGCGGCGCcucUGCGGCc- -3' miRNA: 3'- -GCUGCgACUGG--UGCCGCG---ACGUCGuc -5' |
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18701 | 5' | -59.4 | NC_004682.1 | + | 39316 | 0.79 | 0.059288 |
Target: 5'- uCGACGCUGAgCCGCuuccgcuugccguuGGCGCgGCGGCAGc -3' miRNA: 3'- -GCUGCGACU-GGUG--------------CCGCGaCGUCGUC- -5' |
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18701 | 5' | -59.4 | NC_004682.1 | + | 2961 | 0.77 | 0.079423 |
Target: 5'- gGGCGCgGGCgGCGGCGCUggGCAGUGGa -3' miRNA: 3'- gCUGCGaCUGgUGCCGCGA--CGUCGUC- -5' |
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18701 | 5' | -59.4 | NC_004682.1 | + | 27553 | 0.73 | 0.1586 |
Target: 5'- aCGGCgGC-GACacUGGCGCUGCGGCAGa -3' miRNA: 3'- -GCUG-CGaCUGguGCCGCGACGUCGUC- -5' |
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18701 | 5' | -59.4 | NC_004682.1 | + | 43093 | 0.72 | 0.206869 |
Target: 5'- cCGACGCUGugCgcguACGGCcUUGCGGUGGu -3' miRNA: 3'- -GCUGCGACugG----UGCCGcGACGUCGUC- -5' |
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18701 | 5' | -59.4 | NC_004682.1 | + | 24521 | 0.7 | 0.281012 |
Target: 5'- uCGGCGCgGACUAcCGGgGCUGgGGCu- -3' miRNA: 3'- -GCUGCGaCUGGU-GCCgCGACgUCGuc -5' |
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18701 | 5' | -59.4 | NC_004682.1 | + | 16898 | 0.69 | 0.288061 |
Target: 5'- uCGGCGCguucgGugCcgguguCGGCGCUGUGGCGc -3' miRNA: 3'- -GCUGCGa----CugGu-----GCCGCGACGUCGUc -5' |
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18701 | 5' | -59.4 | NC_004682.1 | + | 30815 | 0.74 | 0.134753 |
Target: 5'- aGACGCUGcCCAgCGGCgacugGCUGguGCGGc -3' miRNA: 3'- gCUGCGACuGGU-GCCG-----CGACguCGUC- -5' |
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18701 | 5' | -59.4 | NC_004682.1 | + | 21018 | 0.66 | 0.457735 |
Target: 5'- gGAUGUUGACgaACaGCGUcaGCAGCAGg -3' miRNA: 3'- gCUGCGACUGg-UGcCGCGa-CGUCGUC- -5' |
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18701 | 5' | -59.4 | NC_004682.1 | + | 30491 | 0.67 | 0.428959 |
Target: 5'- uCGACgGCUucGACCGggccuacccCGGCG-UGCAGCGGc -3' miRNA: 3'- -GCUG-CGA--CUGGU---------GCCGCgACGUCGUC- -5' |
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18701 | 5' | -59.4 | NC_004682.1 | + | 24354 | 0.67 | 0.409462 |
Target: 5'- aGACGUa-GCUcgucuugGCGGCGUUGCAGCGu -3' miRNA: 3'- gCUGCGacUGG-------UGCCGCGACGUCGUc -5' |
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18701 | 5' | -59.4 | NC_004682.1 | + | 37615 | 0.67 | 0.392305 |
Target: 5'- cCGACGCcGGCC-CGGUGgaGCAaggGCAc -3' miRNA: 3'- -GCUGCGaCUGGuGCCGCgaCGU---CGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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