miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18702 3' -62.1 NC_004682.1 + 33464 0.66 0.405721
Target:  5'- gUGCcacCAcCCCGGCugccgCCgUUGCCGCCGCc -3'
miRNA:   3'- gGCGu--GUaGGGCCG-----GG-AGCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 24580 0.66 0.405721
Target:  5'- uCCGCGCcgaCCUGGCUgaUGCCAgCGg -3'
miRNA:   3'- -GGCGUGua-GGGCCGGgaGCGGUgGCg -5'
18702 3' -62.1 NC_004682.1 + 49189 0.66 0.405721
Target:  5'- aCCGgGCAUCCagaacacguuCGGCCU--GCCAUCGg -3'
miRNA:   3'- -GGCgUGUAGG----------GCCGGGagCGGUGGCg -5'
18702 3' -62.1 NC_004682.1 + 20773 0.66 0.405721
Target:  5'- uCCGCuuGUCgCGGCCCUUGaaguucaucacCCACUugGCc -3'
miRNA:   3'- -GGCGugUAGgGCCGGGAGC-----------GGUGG--CG- -5'
18702 3' -62.1 NC_004682.1 + 29386 0.66 0.405721
Target:  5'- cUCGgACAUCCagaacauguccuUGGCCCcagucguuuUCGaCCACUGCu -3'
miRNA:   3'- -GGCgUGUAGG------------GCCGGG---------AGC-GGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 16776 0.66 0.404842
Target:  5'- gCCGgGaCAUcgaCCCGaGCCCUCcaggcccaucaccGCUGCCGCc -3'
miRNA:   3'- -GGCgU-GUA---GGGC-CGGGAG-------------CGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 32825 0.66 0.404842
Target:  5'- -aGcCGCGUCCCGGCgcgucgaucagauCCUUGaCCGCUGg -3'
miRNA:   3'- ggC-GUGUAGGGCCG-------------GGAGC-GGUGGCg -5'
18702 3' -62.1 NC_004682.1 + 4600 0.66 0.396987
Target:  5'- cUCGCGaggcaucauCGUCCCGGaggccaCgCUCGCUGCCGa -3'
miRNA:   3'- -GGCGU---------GUAGGGCCg-----G-GAGCGGUGGCg -5'
18702 3' -62.1 NC_004682.1 + 42776 0.66 0.396987
Target:  5'- gCCGCGa--CCCGGU--UCGCCAagaCGCa -3'
miRNA:   3'- -GGCGUguaGGGCCGggAGCGGUg--GCG- -5'
18702 3' -62.1 NC_004682.1 + 39956 0.66 0.396987
Target:  5'- aCGUGCAgacggcggugaUCCCGGCCUguccgaucagaUCGUC-CCGUu -3'
miRNA:   3'- gGCGUGU-----------AGGGCCGGG-----------AGCGGuGGCG- -5'
18702 3' -62.1 NC_004682.1 + 21287 0.66 0.388376
Target:  5'- gCCGCGCAgaUCCUcgaacgggugcgGGUCUUCGCCguggagguagcGCCGa -3'
miRNA:   3'- -GGCGUGU--AGGG------------CCGGGAGCGG-----------UGGCg -5'
18702 3' -62.1 NC_004682.1 + 13464 0.66 0.387521
Target:  5'- cCCGCccauccaagaccgGCAUCCCGGCCaaggCGCgAUuccaggUGCa -3'
miRNA:   3'- -GGCG-------------UGUAGGGCCGGga--GCGgUG------GCG- -5'
18702 3' -62.1 NC_004682.1 + 9200 0.66 0.387521
Target:  5'- cCCGCGCA-CCCGacaggugaugcgaGCCauccgCGCCAUCGa -3'
miRNA:   3'- -GGCGUGUaGGGC-------------CGGga---GCGGUGGCg -5'
18702 3' -62.1 NC_004682.1 + 48131 0.66 0.383268
Target:  5'- gCGCAucCAUUCCugaaagcucaugucaGGCCCccaggcagaggUCGCUGCCGCc -3'
miRNA:   3'- gGCGU--GUAGGG---------------CCGGG-----------AGCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 37449 0.66 0.379887
Target:  5'- cCCgGUACGcCCCGGCCCUgGCUGaguaCGa -3'
miRNA:   3'- -GG-CGUGUaGGGCCGGGAgCGGUg---GCg -5'
18702 3' -62.1 NC_004682.1 + 48162 0.66 0.379887
Target:  5'- cUCGC-CGUCaCCGGCCUgacccaUCGagaCAUCGCc -3'
miRNA:   3'- -GGCGuGUAG-GGCCGGG------AGCg--GUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 15074 0.66 0.371524
Target:  5'- aUCGCGuCGUCCCGGCgcaccgacgCCUUGUgGgCGUg -3'
miRNA:   3'- -GGCGU-GUAGGGCCG---------GGAGCGgUgGCG- -5'
18702 3' -62.1 NC_004682.1 + 49586 0.66 0.363288
Target:  5'- aCCGUcaGCGUCUCGGCCCagUUGaauCCGUg -3'
miRNA:   3'- -GGCG--UGUAGGGCCGGG--AGCgguGGCG- -5'
18702 3' -62.1 NC_004682.1 + 25800 0.66 0.363288
Target:  5'- gCCGCua--CCgGaGCCCUCGCCACg-- -3'
miRNA:   3'- -GGCGuguaGGgC-CGGGAGCGGUGgcg -5'
18702 3' -62.1 NC_004682.1 + 1841 0.66 0.355178
Target:  5'- uCCGgGCGUcugcucgggcucCCCGGCCCcaUCGg-GCCGCa -3'
miRNA:   3'- -GGCgUGUA------------GGGCCGGG--AGCggUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.