miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18702 3' -62.1 NC_004682.1 + 17789 1.13 0.000118
Target:  5'- aCCGCACAUCCCGGCCCUCGCCACCGCg -3'
miRNA:   3'- -GGCGUGUAGGGCCGGGAGCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 12987 0.8 0.040579
Target:  5'- gCgGCGCAUCCCGGaCCUgGCCACCa- -3'
miRNA:   3'- -GgCGUGUAGGGCCgGGAgCGGUGGcg -5'
18702 3' -62.1 NC_004682.1 + 8914 0.77 0.068448
Target:  5'- cUCGCGCAUgucggcuaucCCCGGCUCUacaucgaCGCCAUCGCa -3'
miRNA:   3'- -GGCGUGUA----------GGGCCGGGA-------GCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 39818 0.74 0.108612
Target:  5'- gCGCGCcgCCCGaugccucggcugcGCUCUUGCCAgCCGCg -3'
miRNA:   3'- gGCGUGuaGGGC-------------CGGGAGCGGU-GGCG- -5'
18702 3' -62.1 NC_004682.1 + 40669 0.74 0.118006
Target:  5'- aCUGCAUggCUCGGgCCaUCGCCGCCGg -3'
miRNA:   3'- -GGCGUGuaGGGCCgGG-AGCGGUGGCg -5'
18702 3' -62.1 NC_004682.1 + 23502 0.73 0.121195
Target:  5'- gCCGUAguUCCaGGCCC-CGCCACCu- -3'
miRNA:   3'- -GGCGUguAGGgCCGGGaGCGGUGGcg -5'
18702 3' -62.1 NC_004682.1 + 3018 0.72 0.147386
Target:  5'- cCCGCGCccagaagucgaucagGUUCauGCCCUUGCCGCaCGCg -3'
miRNA:   3'- -GGCGUG---------------UAGGgcCGGGAGCGGUG-GCG- -5'
18702 3' -62.1 NC_004682.1 + 3255 0.72 0.149722
Target:  5'- aCGCGguUgCCCGcGCCCUgGCCcGCCGUg -3'
miRNA:   3'- gGCGUguA-GGGC-CGGGAgCGG-UGGCG- -5'
18702 3' -62.1 NC_004682.1 + 5533 0.72 0.149722
Target:  5'- gCCGCGCcgAUgCCGGCCCacuucagaUCGgCCAgCGCa -3'
miRNA:   3'- -GGCGUG--UAgGGCCGGG--------AGC-GGUgGCG- -5'
18702 3' -62.1 NC_004682.1 + 35940 0.72 0.15369
Target:  5'- aCUGCu--UUgCGG-CCUCGCCGCCGCa -3'
miRNA:   3'- -GGCGuguAGgGCCgGGAGCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 30831 0.71 0.166173
Target:  5'- aCCG-GCAUCCCGGCUCagaCGCUGCCcaGCg -3'
miRNA:   3'- -GGCgUGUAGGGCCGGGa--GCGGUGG--CG- -5'
18702 3' -62.1 NC_004682.1 + 36476 0.71 0.170092
Target:  5'- uCCGCGuacgccuCGUUCCGGCCUcgcagCGCCuccagaGCCGCa -3'
miRNA:   3'- -GGCGU-------GUAGGGCCGGGa----GCGG------UGGCG- -5'
18702 3' -62.1 NC_004682.1 + 30380 0.71 0.174993
Target:  5'- cUCGCGCuggagCuuGGCgCUCaGCCGCUGCa -3'
miRNA:   3'- -GGCGUGua---GggCCGgGAG-CGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 27447 0.71 0.179558
Target:  5'- cUCGCuguCGUUCaCGGCCCUCGCgGaccUCGCg -3'
miRNA:   3'- -GGCGu--GUAGG-GCCGGGAGCGgU---GGCG- -5'
18702 3' -62.1 NC_004682.1 + 39562 0.71 0.179558
Target:  5'- gCUcCACAUCCCGGCCCaCGgugcgcuacacaCCACCGg -3'
miRNA:   3'- -GGcGUGUAGGGCCGGGaGC------------GGUGGCg -5'
18702 3' -62.1 NC_004682.1 + 28795 0.71 0.184228
Target:  5'- cCCGCACGgcgucaUCUUcGUCC-CGCCGCCGCc -3'
miRNA:   3'- -GGCGUGU------AGGGcCGGGaGCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 27089 0.71 0.184228
Target:  5'- aCCGCAUGUUCCGGUCgaCGCgagACUGCg -3'
miRNA:   3'- -GGCGUGUAGGGCCGGgaGCGg--UGGCG- -5'
18702 3' -62.1 NC_004682.1 + 26898 0.71 0.189005
Target:  5'- aCCGCuucaaGUCCCGcGCCagggaCUCGC-ACCGCg -3'
miRNA:   3'- -GGCGug---UAGGGC-CGG-----GAGCGgUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 37285 0.7 0.198887
Target:  5'- gCGgGCAgcaCGGCCCUCGgCGCgGCg -3'
miRNA:   3'- gGCgUGUaggGCCGGGAGCgGUGgCG- -5'
18702 3' -62.1 NC_004682.1 + 26013 0.7 0.209215
Target:  5'- aCCGCAgGaCCCGGCUggaggCGCaACCGCg -3'
miRNA:   3'- -GGCGUgUaGGGCCGGga---GCGgUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.