Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18702 | 3' | -62.1 | NC_004682.1 | + | 26013 | 0.7 | 0.209215 |
Target: 5'- aCCGCAgGaCCCGGCUggaggCGCaACCGCg -3' miRNA: 3'- -GGCGUgUaGGGCCGGga---GCGgUGGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 43163 | 0.7 | 0.209215 |
Target: 5'- gCGguCGUCCCGGCCUUCuugGCgACCu- -3' miRNA: 3'- gGCguGUAGGGCCGGGAG---CGgUGGcg -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 47310 | 0.7 | 0.209215 |
Target: 5'- -aGCGgGUCCuUGGCCagcCGCUGCCGCg -3' miRNA: 3'- ggCGUgUAGG-GCCGGga-GCGGUGGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 13123 | 0.7 | 0.220003 |
Target: 5'- aCGUACAUgcUCCGGUcugaCCUCGCCAgCGg -3' miRNA: 3'- gGCGUGUA--GGGCCG----GGAGCGGUgGCg -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 6606 | 0.7 | 0.225573 |
Target: 5'- gUCGUGCuugagcaCCUGGCCgaCGaCCACCGCg -3' miRNA: 3'- -GGCGUGua-----GGGCCGGgaGC-GGUGGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 28986 | 0.7 | 0.225573 |
Target: 5'- uCCGCAUgauUCaCCGGCCCaaGCCugCa- -3' miRNA: 3'- -GGCGUGu--AG-GGCCGGGagCGGugGcg -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 23578 | 0.69 | 0.229543 |
Target: 5'- gCCGCugAUCCCGGaCgugcuggaggacgaCUUCGCCGaugUCGCu -3' miRNA: 3'- -GGCGugUAGGGCC-G--------------GGAGCGGU---GGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 11298 | 0.69 | 0.237071 |
Target: 5'- cUCGCGCAUCUCGGaaCUCGaaACCGa -3' miRNA: 3'- -GGCGUGUAGGGCCggGAGCggUGGCg -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 35115 | 0.69 | 0.237071 |
Target: 5'- gCGCACAcCgCCGGCCaccaCGCaCugCGCg -3' miRNA: 3'- gGCGUGUaG-GGCCGGga--GCG-GugGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 6747 | 0.69 | 0.243003 |
Target: 5'- gCCGUACgaGUCUgGGCCU--GCCACCGg -3' miRNA: 3'- -GGCGUG--UAGGgCCGGGagCGGUGGCg -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 3553 | 0.69 | 0.243003 |
Target: 5'- aCCGUccGC-UCCCGGCCCa-GCagGCUGCa -3' miRNA: 3'- -GGCG--UGuAGGGCCGGGagCGg-UGGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 40006 | 0.69 | 0.243003 |
Target: 5'- uCUGCGCGaggCCgaGGCCCUCggugGCCgACCGUa -3' miRNA: 3'- -GGCGUGUa--GGg-CCGGGAG----CGG-UGGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 29170 | 0.69 | 0.249057 |
Target: 5'- cUCGCGCGaaUCCCGGUCgUaGUCAgCGCg -3' miRNA: 3'- -GGCGUGU--AGGGCCGGgAgCGGUgGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 8651 | 0.69 | 0.261539 |
Target: 5'- gCCGC-CGUCUgcgCGGUCCUCGCguuCGgCGCg -3' miRNA: 3'- -GGCGuGUAGG---GCCGGGAGCG---GUgGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 29315 | 0.68 | 0.274525 |
Target: 5'- gCCGC-CGUCCaCGGCUguCUCGCagaccugacCCGCa -3' miRNA: 3'- -GGCGuGUAGG-GCCGG--GAGCGgu-------GGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 30698 | 0.68 | 0.27919 |
Target: 5'- -gGC-CAUCaauUGGCCCUCGucggccaggaagcaCCGCCGCa -3' miRNA: 3'- ggCGuGUAGg--GCCGGGAGC--------------GGUGGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 21996 | 0.68 | 0.281209 |
Target: 5'- uCC-CAgAUCuuGGCCCUgGUCGCCa- -3' miRNA: 3'- -GGcGUgUAGggCCGGGAgCGGUGGcg -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 246 | 0.68 | 0.281209 |
Target: 5'- aCGCACccacuaucggguGUCCCGGCUCUguguggcccugUGCCGgcCCGUg -3' miRNA: 3'- gGCGUG------------UAGGGCCGGGA-----------GCGGU--GGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 28210 | 0.68 | 0.285964 |
Target: 5'- gUGCucuACGUCCuCGGCuucgaggucucuguCCgcgcUCGCCGCCGCg -3' miRNA: 3'- gGCG---UGUAGG-GCCG--------------GG----AGCGGUGGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 527 | 0.68 | 0.288022 |
Target: 5'- gCCGCugGauaCCGGCCCUgGagGCCGg -3' miRNA: 3'- -GGCGugUag-GGCCGGGAgCggUGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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