miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18702 3' -62.1 NC_004682.1 + 36409 0.67 0.347197
Target:  5'- -aGCACGUCacccgcgacgaCGGCCCuggcacUCGCCAguCCGUu -3'
miRNA:   3'- ggCGUGUAGg----------GCCGGG------AGCGGU--GGCG- -5'
18702 3' -62.1 NC_004682.1 + 7579 0.67 0.347197
Target:  5'- -gGCGCAUCgaGGCcgcaaCCUCGuCCcCCGCa -3'
miRNA:   3'- ggCGUGUAGggCCG-----GGAGC-GGuGGCG- -5'
18702 3' -62.1 NC_004682.1 + 38889 0.67 0.347197
Target:  5'- uCUGCAUAgcucaccuccUCCUGuuCCUugaugaCGCCACCGCg -3'
miRNA:   3'- -GGCGUGU----------AGGGCcgGGA------GCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 25187 0.67 0.339345
Target:  5'- gCCGCACucaacagcGUCCaagcuggcgaGGCUgUCGgCACCGUa -3'
miRNA:   3'- -GGCGUG--------UAGGg---------CCGGgAGCgGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 15898 0.67 0.339345
Target:  5'- cUCGUccCAUcCCCGGaacugCUUGCCGCCGCg -3'
miRNA:   3'- -GGCGu-GUA-GGGCCgg---GAGCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 10585 0.67 0.339345
Target:  5'- -aGCGCGaCCUGGgCCaCGCCugCGUc -3'
miRNA:   3'- ggCGUGUaGGGCCgGGaGCGGugGCG- -5'
18702 3' -62.1 NC_004682.1 + 36845 0.67 0.324031
Target:  5'- -gGCACGguggaCaaGGCCCUCGCCcuggaGCCGa -3'
miRNA:   3'- ggCGUGUa----GggCCGGGAGCGG-----UGGCg -5'
18702 3' -62.1 NC_004682.1 + 8717 0.67 0.316569
Target:  5'- aCCGCGCAga-CGGCggcgucaaucuUCUUGCCGCUGUc -3'
miRNA:   3'- -GGCGUGUaggGCCG-----------GGAGCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 3401 0.67 0.309237
Target:  5'- aUGCGCGaaUCCaaaccgauccguUGGCaCCagCGCCGCCGCu -3'
miRNA:   3'- gGCGUGU--AGG------------GCCG-GGa-GCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 36095 0.68 0.302036
Target:  5'- gCGCAgauCGUCCCGGaCCUCuUC-CCGCa -3'
miRNA:   3'- gGCGU---GUAGGGCCgGGAGcGGuGGCG- -5'
18702 3' -62.1 NC_004682.1 + 42333 0.68 0.302036
Target:  5'- aCCGCGCuggcuacCCCGGCCC-CGUgAUCa- -3'
miRNA:   3'- -GGCGUGua-----GGGCCGGGaGCGgUGGcg -5'
18702 3' -62.1 NC_004682.1 + 42823 0.68 0.294964
Target:  5'- -gGCACGUCCUGaCCCa-GCCGUCGCg -3'
miRNA:   3'- ggCGUGUAGGGCcGGGagCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 42148 0.68 0.294964
Target:  5'- -aGCGCGUCguggaucgcUCGGCCC-CGCgagGCCGCg -3'
miRNA:   3'- ggCGUGUAG---------GGCCGGGaGCGg--UGGCG- -5'
18702 3' -62.1 NC_004682.1 + 20252 0.68 0.288022
Target:  5'- cCCGCACGUUgggaaCCGuGUUgggaUCGCCAUCGCu -3'
miRNA:   3'- -GGCGUGUAG-----GGC-CGGg---AGCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 527 0.68 0.288022
Target:  5'- gCCGCugGauaCCGGCCCUgGagGCCGg -3'
miRNA:   3'- -GGCGugUag-GGCCGGGAgCggUGGCg -5'
18702 3' -62.1 NC_004682.1 + 9900 0.68 0.288022
Target:  5'- aCGCGCAUCgCUuGCUCccacgCGCCGCCGa -3'
miRNA:   3'- gGCGUGUAG-GGcCGGGa----GCGGUGGCg -5'
18702 3' -62.1 NC_004682.1 + 28210 0.68 0.285964
Target:  5'- gUGCucuACGUCCuCGGCuucgaggucucuguCCgcgcUCGCCGCCGCg -3'
miRNA:   3'- gGCG---UGUAGG-GCCG--------------GG----AGCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 246 0.68 0.281209
Target:  5'- aCGCACccacuaucggguGUCCCGGCUCUguguggcccugUGCCGgcCCGUg -3'
miRNA:   3'- gGCGUG------------UAGGGCCGGGA-----------GCGGU--GGCG- -5'
18702 3' -62.1 NC_004682.1 + 21996 0.68 0.281209
Target:  5'- uCC-CAgAUCuuGGCCCUgGUCGCCa- -3'
miRNA:   3'- -GGcGUgUAGggCCGGGAgCGGUGGcg -5'
18702 3' -62.1 NC_004682.1 + 30698 0.68 0.27919
Target:  5'- -gGC-CAUCaauUGGCCCUCGucggccaggaagcaCCGCCGCa -3'
miRNA:   3'- ggCGuGUAGg--GCCGGGAGC--------------GGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.