miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18702 3' -62.1 NC_004682.1 + 29315 0.68 0.274525
Target:  5'- gCCGC-CGUCCaCGGCUguCUCGCagaccugacCCGCa -3'
miRNA:   3'- -GGCGuGUAGG-GCCGG--GAGCGgu-------GGCG- -5'
18702 3' -62.1 NC_004682.1 + 8651 0.69 0.261539
Target:  5'- gCCGC-CGUCUgcgCGGUCCUCGCguuCGgCGCg -3'
miRNA:   3'- -GGCGuGUAGG---GCCGGGAGCG---GUgGCG- -5'
18702 3' -62.1 NC_004682.1 + 29170 0.69 0.249057
Target:  5'- cUCGCGCGaaUCCCGGUCgUaGUCAgCGCg -3'
miRNA:   3'- -GGCGUGU--AGGGCCGGgAgCGGUgGCG- -5'
18702 3' -62.1 NC_004682.1 + 6747 0.69 0.243003
Target:  5'- gCCGUACgaGUCUgGGCCU--GCCACCGg -3'
miRNA:   3'- -GGCGUG--UAGGgCCGGGagCGGUGGCg -5'
18702 3' -62.1 NC_004682.1 + 3553 0.69 0.243003
Target:  5'- aCCGUccGC-UCCCGGCCCa-GCagGCUGCa -3'
miRNA:   3'- -GGCG--UGuAGGGCCGGGagCGg-UGGCG- -5'
18702 3' -62.1 NC_004682.1 + 40006 0.69 0.243003
Target:  5'- uCUGCGCGaggCCgaGGCCCUCggugGCCgACCGUa -3'
miRNA:   3'- -GGCGUGUa--GGg-CCGGGAG----CGG-UGGCG- -5'
18702 3' -62.1 NC_004682.1 + 11298 0.69 0.237071
Target:  5'- cUCGCGCAUCUCGGaaCUCGaaACCGa -3'
miRNA:   3'- -GGCGUGUAGGGCCggGAGCggUGGCg -5'
18702 3' -62.1 NC_004682.1 + 35115 0.69 0.237071
Target:  5'- gCGCACAcCgCCGGCCaccaCGCaCugCGCg -3'
miRNA:   3'- gGCGUGUaG-GGCCGGga--GCG-GugGCG- -5'
18702 3' -62.1 NC_004682.1 + 23578 0.69 0.229543
Target:  5'- gCCGCugAUCCCGGaCgugcuggaggacgaCUUCGCCGaugUCGCu -3'
miRNA:   3'- -GGCGugUAGGGCC-G--------------GGAGCGGU---GGCG- -5'
18702 3' -62.1 NC_004682.1 + 28986 0.7 0.225573
Target:  5'- uCCGCAUgauUCaCCGGCCCaaGCCugCa- -3'
miRNA:   3'- -GGCGUGu--AG-GGCCGGGagCGGugGcg -5'
18702 3' -62.1 NC_004682.1 + 6606 0.7 0.225573
Target:  5'- gUCGUGCuugagcaCCUGGCCgaCGaCCACCGCg -3'
miRNA:   3'- -GGCGUGua-----GGGCCGGgaGC-GGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 13123 0.7 0.220003
Target:  5'- aCGUACAUgcUCCGGUcugaCCUCGCCAgCGg -3'
miRNA:   3'- gGCGUGUA--GGGCCG----GGAGCGGUgGCg -5'
18702 3' -62.1 NC_004682.1 + 47310 0.7 0.209215
Target:  5'- -aGCGgGUCCuUGGCCagcCGCUGCCGCg -3'
miRNA:   3'- ggCGUgUAGG-GCCGGga-GCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 26013 0.7 0.209215
Target:  5'- aCCGCAgGaCCCGGCUggaggCGCaACCGCg -3'
miRNA:   3'- -GGCGUgUaGGGCCGGga---GCGgUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 43163 0.7 0.209215
Target:  5'- gCGguCGUCCCGGCCUUCuugGCgACCu- -3'
miRNA:   3'- gGCguGUAGGGCCGGGAG---CGgUGGcg -5'
18702 3' -62.1 NC_004682.1 + 7770 0.7 0.209215
Target:  5'- gCGCACAUcCCCGGCaa-CGaCACCGUg -3'
miRNA:   3'- gGCGUGUA-GGGCCGggaGCgGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 37285 0.7 0.198887
Target:  5'- gCGgGCAgcaCGGCCCUCGgCGCgGCg -3'
miRNA:   3'- gGCgUGUaggGCCGGGAGCgGUGgCG- -5'
18702 3' -62.1 NC_004682.1 + 26898 0.71 0.189005
Target:  5'- aCCGCuucaaGUCCCGcGCCagggaCUCGC-ACCGCg -3'
miRNA:   3'- -GGCGug---UAGGGC-CGG-----GAGCGgUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 27089 0.71 0.184228
Target:  5'- aCCGCAUGUUCCGGUCgaCGCgagACUGCg -3'
miRNA:   3'- -GGCGUGUAGGGCCGGgaGCGg--UGGCG- -5'
18702 3' -62.1 NC_004682.1 + 28795 0.71 0.184228
Target:  5'- cCCGCACGgcgucaUCUUcGUCC-CGCCGCCGCc -3'
miRNA:   3'- -GGCGUGU------AGGGcCGGGaGCGGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.