miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18702 3' -62.1 NC_004682.1 + 246 0.68 0.281209
Target:  5'- aCGCACccacuaucggguGUCCCGGCUCUguguggcccugUGCCGgcCCGUg -3'
miRNA:   3'- gGCGUG------------UAGGGCCGGGA-----------GCGGU--GGCG- -5'
18702 3' -62.1 NC_004682.1 + 527 0.68 0.288022
Target:  5'- gCCGCugGauaCCGGCCCUgGagGCCGg -3'
miRNA:   3'- -GGCGugUag-GGCCGGGAgCggUGGCg -5'
18702 3' -62.1 NC_004682.1 + 1841 0.66 0.355178
Target:  5'- uCCGgGCGUcugcucgggcucCCCGGCCCcaUCGg-GCCGCa -3'
miRNA:   3'- -GGCgUGUA------------GGGCCGGG--AGCggUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 3018 0.72 0.147386
Target:  5'- cCCGCGCccagaagucgaucagGUUCauGCCCUUGCCGCaCGCg -3'
miRNA:   3'- -GGCGUG---------------UAGGgcCGGGAGCGGUG-GCG- -5'
18702 3' -62.1 NC_004682.1 + 3255 0.72 0.149722
Target:  5'- aCGCGguUgCCCGcGCCCUgGCCcGCCGUg -3'
miRNA:   3'- gGCGUguA-GGGC-CGGGAgCGG-UGGCG- -5'
18702 3' -62.1 NC_004682.1 + 3401 0.67 0.309237
Target:  5'- aUGCGCGaaUCCaaaccgauccguUGGCaCCagCGCCGCCGCu -3'
miRNA:   3'- gGCGUGU--AGG------------GCCG-GGa-GCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 3553 0.69 0.243003
Target:  5'- aCCGUccGC-UCCCGGCCCa-GCagGCUGCa -3'
miRNA:   3'- -GGCG--UGuAGGGCCGGGagCGg-UGGCG- -5'
18702 3' -62.1 NC_004682.1 + 4600 0.66 0.396987
Target:  5'- cUCGCGaggcaucauCGUCCCGGaggccaCgCUCGCUGCCGa -3'
miRNA:   3'- -GGCGU---------GUAGGGCCg-----G-GAGCGGUGGCg -5'
18702 3' -62.1 NC_004682.1 + 5533 0.72 0.149722
Target:  5'- gCCGCGCcgAUgCCGGCCCacuucagaUCGgCCAgCGCa -3'
miRNA:   3'- -GGCGUG--UAgGGCCGGG--------AGC-GGUgGCG- -5'
18702 3' -62.1 NC_004682.1 + 6606 0.7 0.225573
Target:  5'- gUCGUGCuugagcaCCUGGCCgaCGaCCACCGCg -3'
miRNA:   3'- -GGCGUGua-----GGGCCGGgaGC-GGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 6747 0.69 0.243003
Target:  5'- gCCGUACgaGUCUgGGCCU--GCCACCGg -3'
miRNA:   3'- -GGCGUG--UAGGgCCGGGagCGGUGGCg -5'
18702 3' -62.1 NC_004682.1 + 7579 0.67 0.347197
Target:  5'- -gGCGCAUCgaGGCcgcaaCCUCGuCCcCCGCa -3'
miRNA:   3'- ggCGUGUAGggCCG-----GGAGC-GGuGGCG- -5'
18702 3' -62.1 NC_004682.1 + 7770 0.7 0.209215
Target:  5'- gCGCACAUcCCCGGCaa-CGaCACCGUg -3'
miRNA:   3'- gGCGUGUA-GGGCCGggaGCgGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 8651 0.69 0.261539
Target:  5'- gCCGC-CGUCUgcgCGGUCCUCGCguuCGgCGCg -3'
miRNA:   3'- -GGCGuGUAGG---GCCGGGAGCG---GUgGCG- -5'
18702 3' -62.1 NC_004682.1 + 8717 0.67 0.316569
Target:  5'- aCCGCGCAga-CGGCggcgucaaucuUCUUGCCGCUGUc -3'
miRNA:   3'- -GGCGUGUaggGCCG-----------GGAGCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 8914 0.77 0.068448
Target:  5'- cUCGCGCAUgucggcuaucCCCGGCUCUacaucgaCGCCAUCGCa -3'
miRNA:   3'- -GGCGUGUA----------GGGCCGGGA-------GCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 9200 0.66 0.387521
Target:  5'- cCCGCGCA-CCCGacaggugaugcgaGCCauccgCGCCAUCGa -3'
miRNA:   3'- -GGCGUGUaGGGC-------------CGGga---GCGGUGGCg -5'
18702 3' -62.1 NC_004682.1 + 9900 0.68 0.288022
Target:  5'- aCGCGCAUCgCUuGCUCccacgCGCCGCCGa -3'
miRNA:   3'- gGCGUGUAG-GGcCGGGa----GCGGUGGCg -5'
18702 3' -62.1 NC_004682.1 + 10585 0.67 0.339345
Target:  5'- -aGCGCGaCCUGGgCCaCGCCugCGUc -3'
miRNA:   3'- ggCGUGUaGGGCCgGGaGCGGugGCG- -5'
18702 3' -62.1 NC_004682.1 + 11298 0.69 0.237071
Target:  5'- cUCGCGCAUCUCGGaaCUCGaaACCGa -3'
miRNA:   3'- -GGCGUGUAGGGCCggGAGCggUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.