miRNA display CGI


Results 21 - 40 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18702 3' -62.1 NC_004682.1 + 12987 0.8 0.040579
Target:  5'- gCgGCGCAUCCCGGaCCUgGCCACCa- -3'
miRNA:   3'- -GgCGUGUAGGGCCgGGAgCGGUGGcg -5'
18702 3' -62.1 NC_004682.1 + 13123 0.7 0.220003
Target:  5'- aCGUACAUgcUCCGGUcugaCCUCGCCAgCGg -3'
miRNA:   3'- gGCGUGUA--GGGCCG----GGAGCGGUgGCg -5'
18702 3' -62.1 NC_004682.1 + 13464 0.66 0.387521
Target:  5'- cCCGCccauccaagaccgGCAUCCCGGCCaaggCGCgAUuccaggUGCa -3'
miRNA:   3'- -GGCG-------------UGUAGGGCCGGga--GCGgUG------GCG- -5'
18702 3' -62.1 NC_004682.1 + 15074 0.66 0.371524
Target:  5'- aUCGCGuCGUCCCGGCgcaccgacgCCUUGUgGgCGUg -3'
miRNA:   3'- -GGCGU-GUAGGGCCG---------GGAGCGgUgGCG- -5'
18702 3' -62.1 NC_004682.1 + 15898 0.67 0.339345
Target:  5'- cUCGUccCAUcCCCGGaacugCUUGCCGCCGCg -3'
miRNA:   3'- -GGCGu-GUA-GGGCCgg---GAGCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 16776 0.66 0.404842
Target:  5'- gCCGgGaCAUcgaCCCGaGCCCUCcaggcccaucaccGCUGCCGCc -3'
miRNA:   3'- -GGCgU-GUA---GGGC-CGGGAG-------------CGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 17789 1.13 0.000118
Target:  5'- aCCGCACAUCCCGGCCCUCGCCACCGCg -3'
miRNA:   3'- -GGCGUGUAGGGCCGGGAGCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 20252 0.68 0.288022
Target:  5'- cCCGCACGUUgggaaCCGuGUUgggaUCGCCAUCGCu -3'
miRNA:   3'- -GGCGUGUAG-----GGC-CGGg---AGCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 20773 0.66 0.405721
Target:  5'- uCCGCuuGUCgCGGCCCUUGaaguucaucacCCACUugGCc -3'
miRNA:   3'- -GGCGugUAGgGCCGGGAGC-----------GGUGG--CG- -5'
18702 3' -62.1 NC_004682.1 + 21287 0.66 0.388376
Target:  5'- gCCGCGCAgaUCCUcgaacgggugcgGGUCUUCGCCguggagguagcGCCGa -3'
miRNA:   3'- -GGCGUGU--AGGG------------CCGGGAGCGG-----------UGGCg -5'
18702 3' -62.1 NC_004682.1 + 21996 0.68 0.281209
Target:  5'- uCC-CAgAUCuuGGCCCUgGUCGCCa- -3'
miRNA:   3'- -GGcGUgUAGggCCGGGAgCGGUGGcg -5'
18702 3' -62.1 NC_004682.1 + 23502 0.73 0.121195
Target:  5'- gCCGUAguUCCaGGCCC-CGCCACCu- -3'
miRNA:   3'- -GGCGUguAGGgCCGGGaGCGGUGGcg -5'
18702 3' -62.1 NC_004682.1 + 23578 0.69 0.229543
Target:  5'- gCCGCugAUCCCGGaCgugcuggaggacgaCUUCGCCGaugUCGCu -3'
miRNA:   3'- -GGCGugUAGGGCC-G--------------GGAGCGGU---GGCG- -5'
18702 3' -62.1 NC_004682.1 + 24580 0.66 0.405721
Target:  5'- uCCGCGCcgaCCUGGCUgaUGCCAgCGg -3'
miRNA:   3'- -GGCGUGua-GGGCCGGgaGCGGUgGCg -5'
18702 3' -62.1 NC_004682.1 + 25187 0.67 0.339345
Target:  5'- gCCGCACucaacagcGUCCaagcuggcgaGGCUgUCGgCACCGUa -3'
miRNA:   3'- -GGCGUG--------UAGGg---------CCGGgAGCgGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 25800 0.66 0.363288
Target:  5'- gCCGCua--CCgGaGCCCUCGCCACg-- -3'
miRNA:   3'- -GGCGuguaGGgC-CGGGAGCGGUGgcg -5'
18702 3' -62.1 NC_004682.1 + 26013 0.7 0.209215
Target:  5'- aCCGCAgGaCCCGGCUggaggCGCaACCGCg -3'
miRNA:   3'- -GGCGUgUaGGGCCGGga---GCGgUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 26898 0.71 0.189005
Target:  5'- aCCGCuucaaGUCCCGcGCCagggaCUCGC-ACCGCg -3'
miRNA:   3'- -GGCGug---UAGGGC-CGG-----GAGCGgUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 27089 0.71 0.184228
Target:  5'- aCCGCAUGUUCCGGUCgaCGCgagACUGCg -3'
miRNA:   3'- -GGCGUGUAGGGCCGGgaGCGg--UGGCG- -5'
18702 3' -62.1 NC_004682.1 + 27447 0.71 0.179558
Target:  5'- cUCGCuguCGUUCaCGGCCCUCGCgGaccUCGCg -3'
miRNA:   3'- -GGCGu--GUAGG-GCCGGGAGCGgU---GGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.