miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18702 3' -62.1 NC_004682.1 + 49586 0.66 0.363288
Target:  5'- aCCGUcaGCGUCUCGGCCCagUUGaauCCGUg -3'
miRNA:   3'- -GGCG--UGUAGGGCCGGG--AGCgguGGCG- -5'
18702 3' -62.1 NC_004682.1 + 49189 0.66 0.405721
Target:  5'- aCCGgGCAUCCagaacacguuCGGCCU--GCCAUCGg -3'
miRNA:   3'- -GGCgUGUAGG----------GCCGGGagCGGUGGCg -5'
18702 3' -62.1 NC_004682.1 + 48162 0.66 0.379887
Target:  5'- cUCGC-CGUCaCCGGCCUgacccaUCGagaCAUCGCc -3'
miRNA:   3'- -GGCGuGUAG-GGCCGGG------AGCg--GUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 48131 0.66 0.383268
Target:  5'- gCGCAucCAUUCCugaaagcucaugucaGGCCCccaggcagaggUCGCUGCCGCc -3'
miRNA:   3'- gGCGU--GUAGGG---------------CCGGG-----------AGCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 47310 0.7 0.209215
Target:  5'- -aGCGgGUCCuUGGCCagcCGCUGCCGCg -3'
miRNA:   3'- ggCGUgUAGG-GCCGGga-GCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 43163 0.7 0.209215
Target:  5'- gCGguCGUCCCGGCCUUCuugGCgACCu- -3'
miRNA:   3'- gGCguGUAGGGCCGGGAG---CGgUGGcg -5'
18702 3' -62.1 NC_004682.1 + 42823 0.68 0.294964
Target:  5'- -gGCACGUCCUGaCCCa-GCCGUCGCg -3'
miRNA:   3'- ggCGUGUAGGGCcGGGagCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 42776 0.66 0.396987
Target:  5'- gCCGCGa--CCCGGU--UCGCCAagaCGCa -3'
miRNA:   3'- -GGCGUguaGGGCCGggAGCGGUg--GCG- -5'
18702 3' -62.1 NC_004682.1 + 42333 0.68 0.302036
Target:  5'- aCCGCGCuggcuacCCCGGCCC-CGUgAUCa- -3'
miRNA:   3'- -GGCGUGua-----GGGCCGGGaGCGgUGGcg -5'
18702 3' -62.1 NC_004682.1 + 42148 0.68 0.294964
Target:  5'- -aGCGCGUCguggaucgcUCGGCCC-CGCgagGCCGCg -3'
miRNA:   3'- ggCGUGUAG---------GGCCGGGaGCGg--UGGCG- -5'
18702 3' -62.1 NC_004682.1 + 40669 0.74 0.118006
Target:  5'- aCUGCAUggCUCGGgCCaUCGCCGCCGg -3'
miRNA:   3'- -GGCGUGuaGGGCCgGG-AGCGGUGGCg -5'
18702 3' -62.1 NC_004682.1 + 40006 0.69 0.243003
Target:  5'- uCUGCGCGaggCCgaGGCCCUCggugGCCgACCGUa -3'
miRNA:   3'- -GGCGUGUa--GGg-CCGGGAG----CGG-UGGCG- -5'
18702 3' -62.1 NC_004682.1 + 39956 0.66 0.396987
Target:  5'- aCGUGCAgacggcggugaUCCCGGCCUguccgaucagaUCGUC-CCGUu -3'
miRNA:   3'- gGCGUGU-----------AGGGCCGGG-----------AGCGGuGGCG- -5'
18702 3' -62.1 NC_004682.1 + 39818 0.74 0.108612
Target:  5'- gCGCGCcgCCCGaugccucggcugcGCUCUUGCCAgCCGCg -3'
miRNA:   3'- gGCGUGuaGGGC-------------CGGGAGCGGU-GGCG- -5'
18702 3' -62.1 NC_004682.1 + 39562 0.71 0.179558
Target:  5'- gCUcCACAUCCCGGCCCaCGgugcgcuacacaCCACCGg -3'
miRNA:   3'- -GGcGUGUAGGGCCGGGaGC------------GGUGGCg -5'
18702 3' -62.1 NC_004682.1 + 38889 0.67 0.347197
Target:  5'- uCUGCAUAgcucaccuccUCCUGuuCCUugaugaCGCCACCGCg -3'
miRNA:   3'- -GGCGUGU----------AGGGCcgGGA------GCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 37449 0.66 0.379887
Target:  5'- cCCgGUACGcCCCGGCCCUgGCUGaguaCGa -3'
miRNA:   3'- -GG-CGUGUaGGGCCGGGAgCGGUg---GCg -5'
18702 3' -62.1 NC_004682.1 + 37285 0.7 0.198887
Target:  5'- gCGgGCAgcaCGGCCCUCGgCGCgGCg -3'
miRNA:   3'- gGCgUGUaggGCCGGGAGCgGUGgCG- -5'
18702 3' -62.1 NC_004682.1 + 36845 0.67 0.324031
Target:  5'- -gGCACGguggaCaaGGCCCUCGCCcuggaGCCGa -3'
miRNA:   3'- ggCGUGUa----GggCCGGGAGCGG-----UGGCg -5'
18702 3' -62.1 NC_004682.1 + 36476 0.71 0.170092
Target:  5'- uCCGCGuacgccuCGUUCCGGCCUcgcagCGCCuccagaGCCGCa -3'
miRNA:   3'- -GGCGU-------GUAGGGCCGGGa----GCGG------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.