miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18702 3' -62.1 NC_004682.1 + 25187 0.67 0.339345
Target:  5'- gCCGCACucaacagcGUCCaagcuggcgaGGCUgUCGgCACCGUa -3'
miRNA:   3'- -GGCGUG--------UAGGg---------CCGGgAGCgGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 23578 0.69 0.229543
Target:  5'- gCCGCugAUCCCGGaCgugcuggaggacgaCUUCGCCGaugUCGCu -3'
miRNA:   3'- -GGCGugUAGGGCC-G--------------GGAGCGGU---GGCG- -5'
18702 3' -62.1 NC_004682.1 + 11298 0.69 0.237071
Target:  5'- cUCGCGCAUCUCGGaaCUCGaaACCGa -3'
miRNA:   3'- -GGCGUGUAGGGCCggGAGCggUGGCg -5'
18702 3' -62.1 NC_004682.1 + 35115 0.69 0.237071
Target:  5'- gCGCACAcCgCCGGCCaccaCGCaCugCGCg -3'
miRNA:   3'- gGCGUGUaG-GGCCGGga--GCG-GugGCG- -5'
18702 3' -62.1 NC_004682.1 + 40006 0.69 0.243003
Target:  5'- uCUGCGCGaggCCgaGGCCCUCggugGCCgACCGUa -3'
miRNA:   3'- -GGCGUGUa--GGg-CCGGGAG----CGG-UGGCG- -5'
18702 3' -62.1 NC_004682.1 + 29170 0.69 0.249057
Target:  5'- cUCGCGCGaaUCCCGGUCgUaGUCAgCGCg -3'
miRNA:   3'- -GGCGUGU--AGGGCCGGgAgCGGUgGCG- -5'
18702 3' -62.1 NC_004682.1 + 8651 0.69 0.261539
Target:  5'- gCCGC-CGUCUgcgCGGUCCUCGCguuCGgCGCg -3'
miRNA:   3'- -GGCGuGUAGG---GCCGGGAGCG---GUgGCG- -5'
18702 3' -62.1 NC_004682.1 + 30698 0.68 0.27919
Target:  5'- -gGC-CAUCaauUGGCCCUCGucggccaggaagcaCCGCCGCa -3'
miRNA:   3'- ggCGuGUAGg--GCCGGGAGC--------------GGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 42148 0.68 0.294964
Target:  5'- -aGCGCGUCguggaucgcUCGGCCC-CGCgagGCCGCg -3'
miRNA:   3'- ggCGUGUAG---------GGCCGGGaGCGg--UGGCG- -5'
18702 3' -62.1 NC_004682.1 + 13123 0.7 0.220003
Target:  5'- aCGUACAUgcUCCGGUcugaCCUCGCCAgCGg -3'
miRNA:   3'- gGCGUGUA--GGGCCG----GGAGCGGUgGCg -5'
18702 3' -62.1 NC_004682.1 + 43163 0.7 0.209215
Target:  5'- gCGguCGUCCCGGCCUUCuugGCgACCu- -3'
miRNA:   3'- gGCguGUAGGGCCGGGAG---CGgUGGcg -5'
18702 3' -62.1 NC_004682.1 + 47310 0.7 0.209215
Target:  5'- -aGCGgGUCCuUGGCCagcCGCUGCCGCg -3'
miRNA:   3'- ggCGUgUAGG-GCCGGga-GCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 12987 0.8 0.040579
Target:  5'- gCgGCGCAUCCCGGaCCUgGCCACCa- -3'
miRNA:   3'- -GgCGUGUAGGGCCgGGAgCGGUGGcg -5'
18702 3' -62.1 NC_004682.1 + 8914 0.77 0.068448
Target:  5'- cUCGCGCAUgucggcuaucCCCGGCUCUacaucgaCGCCAUCGCa -3'
miRNA:   3'- -GGCGUGUA----------GGGCCGGGA-------GCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 39818 0.74 0.108612
Target:  5'- gCGCGCcgCCCGaugccucggcugcGCUCUUGCCAgCCGCg -3'
miRNA:   3'- gGCGUGuaGGGC-------------CGGGAGCGGU-GGCG- -5'
18702 3' -62.1 NC_004682.1 + 35940 0.72 0.15369
Target:  5'- aCUGCu--UUgCGG-CCUCGCCGCCGCa -3'
miRNA:   3'- -GGCGuguAGgGCCgGGAGCGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 36476 0.71 0.170092
Target:  5'- uCCGCGuacgccuCGUUCCGGCCUcgcagCGCCuccagaGCCGCa -3'
miRNA:   3'- -GGCGU-------GUAGGGCCGGGa----GCGG------UGGCG- -5'
18702 3' -62.1 NC_004682.1 + 30380 0.71 0.174993
Target:  5'- cUCGCGCuggagCuuGGCgCUCaGCCGCUGCa -3'
miRNA:   3'- -GGCGUGua---GggCCGgGAG-CGGUGGCG- -5'
18702 3' -62.1 NC_004682.1 + 27447 0.71 0.179558
Target:  5'- cUCGCuguCGUUCaCGGCCCUCGCgGaccUCGCg -3'
miRNA:   3'- -GGCGu--GUAGG-GCCGGGAGCGgU---GGCG- -5'
18702 3' -62.1 NC_004682.1 + 7770 0.7 0.209215
Target:  5'- gCGCACAUcCCCGGCaa-CGaCACCGUg -3'
miRNA:   3'- gGCGUGUA-GGGCCGggaGCgGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.