Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18702 | 3' | -62.1 | NC_004682.1 | + | 246 | 0.68 | 0.281209 |
Target: 5'- aCGCACccacuaucggguGUCCCGGCUCUguguggcccugUGCCGgcCCGUg -3' miRNA: 3'- gGCGUG------------UAGGGCCGGGA-----------GCGGU--GGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 21996 | 0.68 | 0.281209 |
Target: 5'- uCC-CAgAUCuuGGCCCUgGUCGCCa- -3' miRNA: 3'- -GGcGUgUAGggCCGGGAgCGGUGGcg -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 29315 | 0.68 | 0.274525 |
Target: 5'- gCCGC-CGUCCaCGGCUguCUCGCagaccugacCCGCa -3' miRNA: 3'- -GGCGuGUAGG-GCCGG--GAGCGgu-------GGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 6747 | 0.69 | 0.243003 |
Target: 5'- gCCGUACgaGUCUgGGCCU--GCCACCGg -3' miRNA: 3'- -GGCGUG--UAGGgCCGGGagCGGUGGCg -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 3553 | 0.69 | 0.243003 |
Target: 5'- aCCGUccGC-UCCCGGCCCa-GCagGCUGCa -3' miRNA: 3'- -GGCG--UGuAGGGCCGGGagCGg-UGGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 8717 | 0.67 | 0.316569 |
Target: 5'- aCCGCGCAga-CGGCggcgucaaucuUCUUGCCGCUGUc -3' miRNA: 3'- -GGCGUGUaggGCCG-----------GGAGCGGUGGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 36845 | 0.67 | 0.324031 |
Target: 5'- -gGCACGguggaCaaGGCCCUCGCCcuggaGCCGa -3' miRNA: 3'- ggCGUGUa----GggCCGGGAGCGG-----UGGCg -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 15898 | 0.67 | 0.339345 |
Target: 5'- cUCGUccCAUcCCCGGaacugCUUGCCGCCGCg -3' miRNA: 3'- -GGCGu-GUA-GGGCCgg---GAGCGGUGGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 49189 | 0.66 | 0.405721 |
Target: 5'- aCCGgGCAUCCagaacacguuCGGCCU--GCCAUCGg -3' miRNA: 3'- -GGCgUGUAGG----------GCCGGGagCGGUGGCg -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 24580 | 0.66 | 0.405721 |
Target: 5'- uCCGCGCcgaCCUGGCUgaUGCCAgCGg -3' miRNA: 3'- -GGCGUGua-GGGCCGGgaGCGGUgGCg -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 16776 | 0.66 | 0.404842 |
Target: 5'- gCCGgGaCAUcgaCCCGaGCCCUCcaggcccaucaccGCUGCCGCc -3' miRNA: 3'- -GGCgU-GUA---GGGC-CGGGAG-------------CGGUGGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 39956 | 0.66 | 0.396987 |
Target: 5'- aCGUGCAgacggcggugaUCCCGGCCUguccgaucagaUCGUC-CCGUu -3' miRNA: 3'- gGCGUGU-----------AGGGCCGGG-----------AGCGGuGGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 42776 | 0.66 | 0.396987 |
Target: 5'- gCCGCGa--CCCGGU--UCGCCAagaCGCa -3' miRNA: 3'- -GGCGUguaGGGCCGggAGCGGUg--GCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 21287 | 0.66 | 0.388376 |
Target: 5'- gCCGCGCAgaUCCUcgaacgggugcgGGUCUUCGCCguggagguagcGCCGa -3' miRNA: 3'- -GGCGUGU--AGGG------------CCGGGAGCGG-----------UGGCg -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 37449 | 0.66 | 0.379887 |
Target: 5'- cCCgGUACGcCCCGGCCCUgGCUGaguaCGa -3' miRNA: 3'- -GG-CGUGUaGGGCCGGGAgCGGUg---GCg -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 48162 | 0.66 | 0.379887 |
Target: 5'- cUCGC-CGUCaCCGGCCUgacccaUCGagaCAUCGCc -3' miRNA: 3'- -GGCGuGUAG-GGCCGGG------AGCg--GUGGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 15074 | 0.66 | 0.371524 |
Target: 5'- aUCGCGuCGUCCCGGCgcaccgacgCCUUGUgGgCGUg -3' miRNA: 3'- -GGCGU-GUAGGGCCG---------GGAGCGgUgGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 25800 | 0.66 | 0.363288 |
Target: 5'- gCCGCua--CCgGaGCCCUCGCCACg-- -3' miRNA: 3'- -GGCGuguaGGgC-CGGGAGCGGUGgcg -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 36409 | 0.67 | 0.347197 |
Target: 5'- -aGCACGUCacccgcgacgaCGGCCCuggcacUCGCCAguCCGUu -3' miRNA: 3'- ggCGUGUAGg----------GCCGGG------AGCGGU--GGCG- -5' |
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18702 | 3' | -62.1 | NC_004682.1 | + | 10585 | 0.67 | 0.339345 |
Target: 5'- -aGCGCGaCCUGGgCCaCGCCugCGUc -3' miRNA: 3'- ggCGUGUaGGGCCgGGaGCGGugGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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