miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18702 5' -56.3 NC_004682.1 + 868 0.66 0.606423
Target:  5'- aGGGUGGCGuucGgUCGGUCGcuUCcuccuGGCUCg -3'
miRNA:   3'- -UCUACCGCc--CgAGCCAGU--AGu----UCGAG- -5'
18702 5' -56.3 NC_004682.1 + 30145 0.66 0.57329
Target:  5'- cGA-GGuCGGaGgaCGGUCGUgGGGCUCg -3'
miRNA:   3'- uCUaCC-GCC-CgaGCCAGUAgUUCGAG- -5'
18702 5' -56.3 NC_004682.1 + 41149 0.67 0.540597
Target:  5'- ---gGGUGGGCUUGGcCAUUggGUg- -3'
miRNA:   3'- ucuaCCGCCCGAGCCaGUAGuuCGag -5'
18702 5' -56.3 NC_004682.1 + 25316 0.68 0.5075
Target:  5'- ---cGGUGGGCUaccuugcCGGUC-UCcGGCUCg -3'
miRNA:   3'- ucuaCCGCCCGA-------GCCAGuAGuUCGAG- -5'
18702 5' -56.3 NC_004682.1 + 14464 0.68 0.487643
Target:  5'- aGGAcuccUGGCGGGUccaGGgacUCAUCcAGCUCg -3'
miRNA:   3'- -UCU----ACCGCCCGag-CC---AGUAGuUCGAG- -5'
18702 5' -56.3 NC_004682.1 + 1855 0.68 0.477341
Target:  5'- ---cGGUGGGgaCGGagAUCAGGCUg -3'
miRNA:   3'- ucuaCCGCCCgaGCCagUAGUUCGAg -5'
18702 5' -56.3 NC_004682.1 + 46411 0.68 0.467146
Target:  5'- ---cGGCGGGCUCGGggCcgCAcGCg- -3'
miRNA:   3'- ucuaCCGCCCGAGCCa-GuaGUuCGag -5'
18702 5' -56.3 NC_004682.1 + 1647 0.68 0.457066
Target:  5'- gGGAUGGCGucGGCgUCGGUCGacUCGAcCUUg -3'
miRNA:   3'- -UCUACCGC--CCG-AGCCAGU--AGUUcGAG- -5'
18702 5' -56.3 NC_004682.1 + 643 0.7 0.3633
Target:  5'- -uAUGGCGGGC-CaGUCGUCGGGUa- -3'
miRNA:   3'- ucUACCGCCCGaGcCAGUAGUUCGag -5'
18702 5' -56.3 NC_004682.1 + 47786 0.7 0.354685
Target:  5'- aAGAaGGCGGGCcacaCGGUCuacucgAUCAAGgCUCu -3'
miRNA:   3'- -UCUaCCGCCCGa---GCCAG------UAGUUC-GAG- -5'
18702 5' -56.3 NC_004682.1 + 29096 0.71 0.329712
Target:  5'- gAGAUgucGGCGGGgUCGG-CuUCGAGCUUc -3'
miRNA:   3'- -UCUA---CCGCCCgAGCCaGuAGUUCGAG- -5'
18702 5' -56.3 NC_004682.1 + 6503 0.71 0.324876
Target:  5'- --cUGGCGGGCUacucgcaaggcgcggUGGUCGUCGGccagguGCUCa -3'
miRNA:   3'- ucuACCGCCCGA---------------GCCAGUAGUU------CGAG- -5'
18702 5' -56.3 NC_004682.1 + 17823 1.1 0.000518
Target:  5'- cAGAUGGCGGGCUCGGUCAUCAAGCUCg -3'
miRNA:   3'- -UCUACCGCCCGAGCCAGUAGUUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.