miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18703 3' -55.7 NC_004682.1 + 26363 0.66 0.578656
Target:  5'- -cCUGuCGGCGcGCAGCGGccuccUGGAuCUGCu -3'
miRNA:   3'- uuGAC-GUCGC-CGUCGUCu----ACCU-GAUG- -5'
18703 3' -55.7 NC_004682.1 + 50525 0.66 0.578656
Target:  5'- ---gGCAGgGGguGcCAGGUGGGgUACc -3'
miRNA:   3'- uugaCGUCgCCguC-GUCUACCUgAUG- -5'
18703 3' -55.7 NC_004682.1 + 15813 0.66 0.567425
Target:  5'- aAGC-GCGGCGGCaAGCAGuuccggGGAUgggACg -3'
miRNA:   3'- -UUGaCGUCGCCG-UCGUCua----CCUGa--UG- -5'
18703 3' -55.7 NC_004682.1 + 28104 0.66 0.567425
Target:  5'- uGGCUGCucGCGGCGGC-GAgcgcGGACa-- -3'
miRNA:   3'- -UUGACGu-CGCCGUCGuCUa---CCUGaug -5'
18703 3' -55.7 NC_004682.1 + 31234 0.67 0.54514
Target:  5'- cAGCgggauCAGCuucuGCAGCAGAcGGGCUGCg -3'
miRNA:   3'- -UUGac---GUCGc---CGUCGUCUaCCUGAUG- -5'
18703 3' -55.7 NC_004682.1 + 28706 0.67 0.534103
Target:  5'- cACUcGCGGCGGCGGCg---GGACg-- -3'
miRNA:   3'- uUGA-CGUCGCCGUCGucuaCCUGaug -5'
18703 3' -55.7 NC_004682.1 + 29083 0.67 0.523145
Target:  5'- uACUGggucCAGUGGCAGgGGGaGGACUGg -3'
miRNA:   3'- uUGAC----GUCGCCGUCgUCUaCCUGAUg -5'
18703 3' -55.7 NC_004682.1 + 4147 0.67 0.523145
Target:  5'- -cCUGCAGcCGGCGGCuu-UGGagaccGCUGCu -3'
miRNA:   3'- uuGACGUC-GCCGUCGucuACC-----UGAUG- -5'
18703 3' -55.7 NC_004682.1 + 26255 0.69 0.418398
Target:  5'- cAACUGCAacggcaucucgauGCGGggcgacgaGGCAGAUGGuCUGCu -3'
miRNA:   3'- -UUGACGU-------------CGCCg-------UCGUCUACCuGAUG- -5'
18703 3' -55.7 NC_004682.1 + 11074 0.69 0.390736
Target:  5'- cGCUGCAGCaGCAGCGaAUucGGACaUGCg -3'
miRNA:   3'- uUGACGUCGcCGUCGUcUA--CCUG-AUG- -5'
18703 3' -55.7 NC_004682.1 + 16661 0.71 0.302603
Target:  5'- cGCUGCgcggcaugcgcucgGGCGGCAGCGguGAUGGGCc-- -3'
miRNA:   3'- uUGACG--------------UCGCCGUCGU--CUACCUGaug -5'
18703 3' -55.7 NC_004682.1 + 10784 0.71 0.297203
Target:  5'- ---aGCAGUGGCAcGcCGGGUGcGACUGCa -3'
miRNA:   3'- uugaCGUCGCCGU-C-GUCUAC-CUGAUG- -5'
18703 3' -55.7 NC_004682.1 + 38624 0.73 0.222004
Target:  5'- --aUGCAGCGGUAGCGGAUcGaGACgACa -3'
miRNA:   3'- uugACGUCGCCGUCGUCUA-C-CUGaUG- -5'
18703 3' -55.7 NC_004682.1 + 18779 1.06 0.00085
Target:  5'- gAACUGCAGCGGCAGCAGAUGGACUACc -3'
miRNA:   3'- -UUGACGUCGCCGUCGUCUACCUGAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.