miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18703 5' -60.3 NC_004682.1 + 41742 0.66 0.482749
Target:  5'- -aGCCGGUCAGGaUCgacaGCGACCGGg -3'
miRNA:   3'- ugUGGCUGGUCC-AGagg-CGCUGGCCg -5'
18703 5' -60.3 NC_004682.1 + 44248 0.66 0.47687
Target:  5'- uCAUCGACUAGGUCucUggcuaucagcccaacCCGUGACCGcuGCa -3'
miRNA:   3'- uGUGGCUGGUCCAG--A---------------GGCGCUGGC--CG- -5'
18703 5' -60.3 NC_004682.1 + 43079 0.66 0.471998
Target:  5'- -aGCCGgggACCgAGGUCUCCaucaaggGCGAgCgCGGCa -3'
miRNA:   3'- ugUGGC---UGG-UCCAGAGG-------CGCU-G-GCCG- -5'
18703 5' -60.3 NC_004682.1 + 11746 0.66 0.471998
Target:  5'- uCGCCcGCaAGGUC-CCGaugggucCGACCGGCa -3'
miRNA:   3'- uGUGGcUGgUCCAGaGGC-------GCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 36002 0.66 0.470056
Target:  5'- aACAUCGGCUucucaugcgggaagAGGUCcgggacgaUCUGCGcCCGGUa -3'
miRNA:   3'- -UGUGGCUGG--------------UCCAG--------AGGCGCuGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 41468 0.66 0.463292
Target:  5'- gACGCCGACaAGGcgaUC-CCGCuGuCCGGUg -3'
miRNA:   3'- -UGUGGCUGgUCC---AGaGGCG-CuGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 46689 0.66 0.463292
Target:  5'- gACGCCGAagaugugcagcaCCGGGUa-CCGCGugCcGCu -3'
miRNA:   3'- -UGUGGCU------------GGUCCAgaGGCGCugGcCG- -5'
18703 5' -60.3 NC_004682.1 + 18330 0.66 0.453718
Target:  5'- gGCACCGacaGCCAGGUCgau---ACCGGCc -3'
miRNA:   3'- -UGUGGC---UGGUCCAGaggcgcUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 30739 0.66 0.453718
Target:  5'- cUACCaGGcCCAGGaaCUCCGCGucCUGGCc -3'
miRNA:   3'- uGUGG-CU-GGUCCa-GAGGCGCu-GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 44380 0.66 0.453718
Target:  5'- gACuCCGACCcGGUCUacgagaaCGUGGCCGa- -3'
miRNA:   3'- -UGuGGCUGGuCCAGAg------GCGCUGGCcg -5'
18703 5' -60.3 NC_004682.1 + 22660 0.66 0.451816
Target:  5'- -uGCCGAacgUCAGGaagccucaucggCUUCGgGGCCGGCg -3'
miRNA:   3'- ugUGGCU---GGUCCa-----------GAGGCgCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 3205 0.66 0.444253
Target:  5'- uGCGCCGccugcGCCAGuGaUCgacCCGUaACCGGCg -3'
miRNA:   3'- -UGUGGC-----UGGUC-C-AGa--GGCGcUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 46066 0.66 0.444253
Target:  5'- cGCAgCGGCagugcuGGUCUCCGCaGucgUCGGCu -3'
miRNA:   3'- -UGUgGCUGgu----CCAGAGGCG-Cu--GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 8648 0.66 0.443313
Target:  5'- gACGCCG-CCGucugcgcGGUCcUCGCGuuCGGCg -3'
miRNA:   3'- -UGUGGCuGGU-------CCAGaGGCGCugGCCG- -5'
18703 5' -60.3 NC_004682.1 + 8076 0.66 0.4349
Target:  5'- -gAUCGACauCAGGaUCU-CGuCGACCGGCa -3'
miRNA:   3'- ugUGGCUG--GUCC-AGAgGC-GCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 29299 0.66 0.433971
Target:  5'- cGCAgCGAugagcuuCCGGGUCUCCugGUGGUCGGUg -3'
miRNA:   3'- -UGUgGCU-------GGUCCAGAGG--CGCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 31473 0.66 0.425662
Target:  5'- cCACCaggugGGCCAGGaUCUUCGUG-UCGGUg -3'
miRNA:   3'- uGUGG-----CUGGUCC-AGAGGCGCuGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 32800 0.67 0.420175
Target:  5'- uACGCCGagGCC-GGUCUgggucggaagaaggcCCGCGAagCGGCc -3'
miRNA:   3'- -UGUGGC--UGGuCCAGA---------------GGCGCUg-GCCG- -5'
18703 5' -60.3 NC_004682.1 + 12574 0.67 0.407541
Target:  5'- -gACCGACCAGGUCg-CG-GGCaCGGa -3'
miRNA:   3'- ugUGGCUGGUCCAGagGCgCUG-GCCg -5'
18703 5' -60.3 NC_004682.1 + 17682 0.67 0.398664
Target:  5'- aGCAgCGAgcCCAGcGUgUCCGCGagcguggugaacGCUGGCg -3'
miRNA:   3'- -UGUgGCU--GGUC-CAgAGGCGC------------UGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.