Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18703 | 5' | -60.3 | NC_004682.1 | + | 37554 | 0.67 | 0.370265 |
Target: 5'- -gGCCGGCgucggguaguccauCAGGUCUCCGauguggagcaacUGAuCCGGCu -3' miRNA: 3'- ugUGGCUG--------------GUCCAGAGGC------------GCU-GGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 22919 | 0.67 | 0.398664 |
Target: 5'- cGCACCaGCgCGGG-CUCCGgGACCuucuuccgGGCc -3' miRNA: 3'- -UGUGGcUG-GUCCaGAGGCgCUGG--------CCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 26169 | 0.67 | 0.372789 |
Target: 5'- uUACCGAgaAGGUCUUCGU-ACCGGg -3' miRNA: 3'- uGUGGCUggUCCAGAGGCGcUGGCCg -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 39934 | 0.68 | 0.356184 |
Target: 5'- gGCcuguCCGAUCAGaucGUCccgUUCGCGGCUGGCa -3' miRNA: 3'- -UGu---GGCUGGUC---CAG---AGGCGCUGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 48318 | 0.68 | 0.364421 |
Target: 5'- cCGCCaauGACCAaGGUg-UCGCGGCUGGCc -3' miRNA: 3'- uGUGG---CUGGU-CCAgaGGCGCUGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 45621 | 0.68 | 0.336954 |
Target: 5'- cACGCCGGCCccggcgcaggcGGGUCcaacuugugaacaCCGCaGugCGGCg -3' miRNA: 3'- -UGUGGCUGG-----------UCCAGa------------GGCG-CugGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 46067 | 0.68 | 0.324561 |
Target: 5'- aACGUCGACCAGGUgaagUCCGCG-CUGGa -3' miRNA: 3'- -UGUGGCUGGUCCAg---AGGCGCuGGCCg -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 35418 | 0.68 | 0.364421 |
Target: 5'- gGCACCGGCCcagucgGGGUCguacUCCGuCGACaGGa -3' miRNA: 3'- -UGUGGCUGG------UCCAG----AGGC-GCUGgCCg -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 6257 | 0.68 | 0.332267 |
Target: 5'- gACGCCGACCuccGGG-CUCUG-GGCCuggaGGCg -3' miRNA: 3'- -UGUGGCUGG---UCCaGAGGCgCUGG----CCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 34778 | 0.68 | 0.348079 |
Target: 5'- aACGCCG-CCAGGUUgaCGUGGCCcaGGUu -3' miRNA: 3'- -UGUGGCuGGUCCAGagGCGCUGG--CCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 590 | 0.68 | 0.364421 |
Target: 5'- cAUACgGAgaCAGGUgCUCCGUGACgCGGg -3' miRNA: 3'- -UGUGgCUg-GUCCA-GAGGCGCUG-GCCg -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 25579 | 0.68 | 0.348079 |
Target: 5'- cCACCGGCUgAGGUgUgUGCG-CUGGCg -3' miRNA: 3'- uGUGGCUGG-UCCAgAgGCGCuGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 11789 | 0.68 | 0.356184 |
Target: 5'- cCACUgGACCGGugccGUCUCgGCGucguggACCGGCg -3' miRNA: 3'- uGUGG-CUGGUC----CAGAGgCGC------UGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 8410 | 0.68 | 0.356184 |
Target: 5'- cCGCaagaaGAuCCAGGUCaaCGCGAcccCCGGCa -3' miRNA: 3'- uGUGg----CU-GGUCCAGagGCGCU---GGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 6328 | 0.68 | 0.348079 |
Target: 5'- -gGCCGACCcgcuGGGUCcgggacuccCCGcCGACaCGGCg -3' miRNA: 3'- ugUGGCUGG----UCCAGa--------GGC-GCUG-GCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 30303 | 0.69 | 0.288037 |
Target: 5'- aGCGCCGAgUAGG-C-CCGUGAggggucuaCCGGCa -3' miRNA: 3'- -UGUGGCUgGUCCaGaGGCGCU--------GGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 1073 | 0.69 | 0.295075 |
Target: 5'- -gACCGAUaCAGGUCUCUGaCGAUgGGa -3' miRNA: 3'- ugUGGCUG-GUCCAGAGGC-GCUGgCCg -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 46450 | 0.69 | 0.283878 |
Target: 5'- cGCGCUGcUCuGGcUCUCCGCGAggcguucccucgcacCCGGCg -3' miRNA: 3'- -UGUGGCuGGuCC-AGAGGCGCU---------------GGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 33593 | 0.7 | 0.254824 |
Target: 5'- aACGCgGGCCAGGcgUUCGCGaaGCUGGCc -3' miRNA: 3'- -UGUGgCUGGUCCagAGGCGC--UGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 16288 | 0.7 | 0.26575 |
Target: 5'- aACACCGACCGGcgugcagcccagacGcucucccugCUCCGCGA-CGGCa -3' miRNA: 3'- -UGUGGCUGGUC--------------Ca--------GAGGCGCUgGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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