miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18703 5' -60.3 NC_004682.1 + 18815 1.11 0.000252
Target:  5'- uACACCGACCAGGUCUCCGCGACCGGCa -3'
miRNA:   3'- -UGUGGCUGGUCCAGAGGCGCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 22077 0.75 0.110367
Target:  5'- gACACCGugUucguggagcGGGUCUCCaaGAUCGGCu -3'
miRNA:   3'- -UGUGGCugG---------UCCAGAGGcgCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 5100 0.75 0.126349
Target:  5'- cGCACCGACCcccguGGUCgacgCCGCGccgaucCUGGCg -3'
miRNA:   3'- -UGUGGCUGGu----CCAGa---GGCGCu-----GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 23900 0.75 0.127716
Target:  5'- gGCACCGGCCAcacccccgaggacgcGG-CUgCCGCGAUgGGCa -3'
miRNA:   3'- -UGUGGCUGGU---------------CCaGA-GGCGCUGgCCG- -5'
18703 5' -60.3 NC_004682.1 + 35809 0.74 0.140651
Target:  5'- cGCACCGuuuccgGCCAGGUCUCCuuaGACCcaucgGGCu -3'
miRNA:   3'- -UGUGGC------UGGUCCAGAGGcg-CUGG-----CCG- -5'
18703 5' -60.3 NC_004682.1 + 30180 0.73 0.156422
Target:  5'- gGCACCGacGCCAGGaUCUCguCGUGgAUCGGCa -3'
miRNA:   3'- -UGUGGC--UGGUCC-AGAG--GCGC-UGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 12260 0.73 0.156422
Target:  5'- uACACCGAgCAGGUCggCGCGAUCcgugagGGCc -3'
miRNA:   3'- -UGUGGCUgGUCCAGagGCGCUGG------CCG- -5'
18703 5' -60.3 NC_004682.1 + 47700 0.72 0.178376
Target:  5'- -gAUCGGCCuggcugaaggcaAGGUCUCCGaGGCCGGUc -3'
miRNA:   3'- ugUGGCUGG------------UCCAGAGGCgCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 10716 0.72 0.197867
Target:  5'- gGCACCaGGCaCAGGUCUCU-CGACCaguGGCc -3'
miRNA:   3'- -UGUGG-CUG-GUCCAGAGGcGCUGG---CCG- -5'
18703 5' -60.3 NC_004682.1 + 14664 0.71 0.213682
Target:  5'- gACACCGGCCuguGGa---CGcCGACCGGCu -3'
miRNA:   3'- -UGUGGCUGGu--CCagagGC-GCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 41400 0.71 0.21919
Target:  5'- gACGCUGcACCGGGUCUCagaGCaGuuCGGCu -3'
miRNA:   3'- -UGUGGC-UGGUCCAGAGg--CG-CugGCCG- -5'
18703 5' -60.3 NC_004682.1 + 934 0.71 0.224819
Target:  5'- cCACCGAgaAGGUCaCCGCcAUCGGCa -3'
miRNA:   3'- uGUGGCUggUCCAGaGGCGcUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 24499 0.71 0.23057
Target:  5'- gACACCGcuggcaucaGCCAGGUCggCGCGgacuACCGGg -3'
miRNA:   3'- -UGUGGC---------UGGUCCAGagGCGC----UGGCCg -5'
18703 5' -60.3 NC_004682.1 + 33593 0.7 0.254824
Target:  5'- aACGCgGGCCAGGcgUUCGCGaaGCUGGCc -3'
miRNA:   3'- -UGUGgCUGGUCCagAGGCGC--UGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 16288 0.7 0.26575
Target:  5'- aACACCGACCGGcgugcagcccagacGcucucccugCUCCGCGA-CGGCa -3'
miRNA:   3'- -UGUGGCUGGUC--------------Ca--------GAGGCGCUgGCCG- -5'
18703 5' -60.3 NC_004682.1 + 46450 0.69 0.283878
Target:  5'- cGCGCUGcUCuGGcUCUCCGCGAggcguucccucgcacCCGGCg -3'
miRNA:   3'- -UGUGGCuGGuCC-AGAGGCGCU---------------GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 30303 0.69 0.288037
Target:  5'- aGCGCCGAgUAGG-C-CCGUGAggggucuaCCGGCa -3'
miRNA:   3'- -UGUGGCUgGUCCaGaGGCGCU--------GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 1073 0.69 0.295075
Target:  5'- -gACCGAUaCAGGUCUCUGaCGAUgGGa -3'
miRNA:   3'- ugUGGCUG-GUCCAGAGGC-GCUGgCCg -5'
18703 5' -60.3 NC_004682.1 + 46067 0.68 0.324561
Target:  5'- aACGUCGACCAGGUgaagUCCGCG-CUGGa -3'
miRNA:   3'- -UGUGGCUGGUCCAg---AGGCGCuGGCCg -5'
18703 5' -60.3 NC_004682.1 + 6257 0.68 0.332267
Target:  5'- gACGCCGACCuccGGG-CUCUG-GGCCuggaGGCg -3'
miRNA:   3'- -UGUGGCUGG---UCCaGAGGCgCUGG----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.