Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18703 | 5' | -60.3 | NC_004682.1 | + | 45621 | 0.68 | 0.336954 |
Target: 5'- cACGCCGGCCccggcgcaggcGGGUCcaacuugugaacaCCGCaGugCGGCg -3' miRNA: 3'- -UGUGGCUGG-----------UCCAGa------------GGCG-CugGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 6328 | 0.68 | 0.348079 |
Target: 5'- -gGCCGACCcgcuGGGUCcgggacuccCCGcCGACaCGGCg -3' miRNA: 3'- ugUGGCUGG----UCCAGa--------GGC-GCUG-GCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 25579 | 0.68 | 0.348079 |
Target: 5'- cCACCGGCUgAGGUgUgUGCG-CUGGCg -3' miRNA: 3'- uGUGGCUGG-UCCAgAgGCGCuGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 34778 | 0.68 | 0.348079 |
Target: 5'- aACGCCG-CCAGGUUgaCGUGGCCcaGGUu -3' miRNA: 3'- -UGUGGCuGGUCCAGagGCGCUGG--CCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 8410 | 0.68 | 0.356184 |
Target: 5'- cCGCaagaaGAuCCAGGUCaaCGCGAcccCCGGCa -3' miRNA: 3'- uGUGg----CU-GGUCCAGagGCGCU---GGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 39934 | 0.68 | 0.356184 |
Target: 5'- gGCcuguCCGAUCAGaucGUCccgUUCGCGGCUGGCa -3' miRNA: 3'- -UGu---GGCUGGUC---CAG---AGGCGCUGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 11789 | 0.68 | 0.356184 |
Target: 5'- cCACUgGACCGGugccGUCUCgGCGucguggACCGGCg -3' miRNA: 3'- uGUGG-CUGGUC----CAGAGgCGC------UGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 48318 | 0.68 | 0.364421 |
Target: 5'- cCGCCaauGACCAaGGUg-UCGCGGCUGGCc -3' miRNA: 3'- uGUGG---CUGGU-CCAgaGGCGCUGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 35418 | 0.68 | 0.364421 |
Target: 5'- gGCACCGGCCcagucgGGGUCguacUCCGuCGACaGGa -3' miRNA: 3'- -UGUGGCUGG------UCCAG----AGGC-GCUGgCCg -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 590 | 0.68 | 0.364421 |
Target: 5'- cAUACgGAgaCAGGUgCUCCGUGACgCGGg -3' miRNA: 3'- -UGUGgCUg-GUCCA-GAGGCGCUG-GCCg -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 37554 | 0.67 | 0.370265 |
Target: 5'- -gGCCGGCgucggguaguccauCAGGUCUCCGauguggagcaacUGAuCCGGCu -3' miRNA: 3'- ugUGGCUG--------------GUCCAGAGGC------------GCU-GGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 26169 | 0.67 | 0.372789 |
Target: 5'- uUACCGAgaAGGUCUUCGU-ACCGGg -3' miRNA: 3'- uGUGGCUggUCCAGAGGCGcUGGCCg -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 22919 | 0.67 | 0.398664 |
Target: 5'- cGCACCaGCgCGGG-CUCCGgGACCuucuuccgGGCc -3' miRNA: 3'- -UGUGGcUG-GUCCaGAGGCgCUGG--------CCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 17682 | 0.67 | 0.398664 |
Target: 5'- aGCAgCGAgcCCAGcGUgUCCGCGagcguggugaacGCUGGCg -3' miRNA: 3'- -UGUgGCU--GGUC-CAgAGGCGC------------UGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 12574 | 0.67 | 0.407541 |
Target: 5'- -gACCGACCAGGUCg-CG-GGCaCGGa -3' miRNA: 3'- ugUGGCUGGUCCAGagGCgCUG-GCCg -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 32800 | 0.67 | 0.420175 |
Target: 5'- uACGCCGagGCC-GGUCUgggucggaagaaggcCCGCGAagCGGCc -3' miRNA: 3'- -UGUGGC--UGGuCCAGA---------------GGCGCUg-GCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 31473 | 0.66 | 0.425662 |
Target: 5'- cCACCaggugGGCCAGGaUCUUCGUG-UCGGUg -3' miRNA: 3'- uGUGG-----CUGGUCC-AGAGGCGCuGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 29299 | 0.66 | 0.433971 |
Target: 5'- cGCAgCGAugagcuuCCGGGUCUCCugGUGGUCGGUg -3' miRNA: 3'- -UGUgGCU-------GGUCCAGAGG--CGCUGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 8076 | 0.66 | 0.4349 |
Target: 5'- -gAUCGACauCAGGaUCU-CGuCGACCGGCa -3' miRNA: 3'- ugUGGCUG--GUCC-AGAgGC-GCUGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 8648 | 0.66 | 0.443313 |
Target: 5'- gACGCCG-CCGucugcgcGGUCcUCGCGuuCGGCg -3' miRNA: 3'- -UGUGGCuGGU-------CCAGaGGCGCugGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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