miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18703 5' -60.3 NC_004682.1 + 22919 0.67 0.398664
Target:  5'- cGCACCaGCgCGGG-CUCCGgGACCuucuuccgGGCc -3'
miRNA:   3'- -UGUGGcUG-GUCCaGAGGCgCUGG--------CCG- -5'
18703 5' -60.3 NC_004682.1 + 26169 0.67 0.372789
Target:  5'- uUACCGAgaAGGUCUUCGU-ACCGGg -3'
miRNA:   3'- uGUGGCUggUCCAGAGGCGcUGGCCg -5'
18703 5' -60.3 NC_004682.1 + 37554 0.67 0.370265
Target:  5'- -gGCCGGCgucggguaguccauCAGGUCUCCGauguggagcaacUGAuCCGGCu -3'
miRNA:   3'- ugUGGCUG--------------GUCCAGAGGC------------GCU-GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 48318 0.68 0.364421
Target:  5'- cCGCCaauGACCAaGGUg-UCGCGGCUGGCc -3'
miRNA:   3'- uGUGG---CUGGU-CCAgaGGCGCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 590 0.68 0.364421
Target:  5'- cAUACgGAgaCAGGUgCUCCGUGACgCGGg -3'
miRNA:   3'- -UGUGgCUg-GUCCA-GAGGCGCUG-GCCg -5'
18703 5' -60.3 NC_004682.1 + 35418 0.68 0.364421
Target:  5'- gGCACCGGCCcagucgGGGUCguacUCCGuCGACaGGa -3'
miRNA:   3'- -UGUGGCUGG------UCCAG----AGGC-GCUGgCCg -5'
18703 5' -60.3 NC_004682.1 + 11789 0.68 0.356184
Target:  5'- cCACUgGACCGGugccGUCUCgGCGucguggACCGGCg -3'
miRNA:   3'- uGUGG-CUGGUC----CAGAGgCGC------UGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 8410 0.68 0.356184
Target:  5'- cCGCaagaaGAuCCAGGUCaaCGCGAcccCCGGCa -3'
miRNA:   3'- uGUGg----CU-GGUCCAGagGCGCU---GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 39934 0.68 0.356184
Target:  5'- gGCcuguCCGAUCAGaucGUCccgUUCGCGGCUGGCa -3'
miRNA:   3'- -UGu---GGCUGGUC---CAG---AGGCGCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 6328 0.68 0.348079
Target:  5'- -gGCCGACCcgcuGGGUCcgggacuccCCGcCGACaCGGCg -3'
miRNA:   3'- ugUGGCUGG----UCCAGa--------GGC-GCUG-GCCG- -5'
18703 5' -60.3 NC_004682.1 + 34778 0.68 0.348079
Target:  5'- aACGCCG-CCAGGUUgaCGUGGCCcaGGUu -3'
miRNA:   3'- -UGUGGCuGGUCCAGagGCGCUGG--CCG- -5'
18703 5' -60.3 NC_004682.1 + 25579 0.68 0.348079
Target:  5'- cCACCGGCUgAGGUgUgUGCG-CUGGCg -3'
miRNA:   3'- uGUGGCUGG-UCCAgAgGCGCuGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 45621 0.68 0.336954
Target:  5'- cACGCCGGCCccggcgcaggcGGGUCcaacuugugaacaCCGCaGugCGGCg -3'
miRNA:   3'- -UGUGGCUGG-----------UCCAGa------------GGCG-CugGCCG- -5'
18703 5' -60.3 NC_004682.1 + 6257 0.68 0.332267
Target:  5'- gACGCCGACCuccGGG-CUCUG-GGCCuggaGGCg -3'
miRNA:   3'- -UGUGGCUGG---UCCaGAGGCgCUGG----CCG- -5'
18703 5' -60.3 NC_004682.1 + 46067 0.68 0.324561
Target:  5'- aACGUCGACCAGGUgaagUCCGCG-CUGGa -3'
miRNA:   3'- -UGUGGCUGGUCCAg---AGGCGCuGGCCg -5'
18703 5' -60.3 NC_004682.1 + 1073 0.69 0.295075
Target:  5'- -gACCGAUaCAGGUCUCUGaCGAUgGGa -3'
miRNA:   3'- ugUGGCUG-GUCCAGAGGC-GCUGgCCg -5'
18703 5' -60.3 NC_004682.1 + 30303 0.69 0.288037
Target:  5'- aGCGCCGAgUAGG-C-CCGUGAggggucuaCCGGCa -3'
miRNA:   3'- -UGUGGCUgGUCCaGaGGCGCU--------GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 46450 0.69 0.283878
Target:  5'- cGCGCUGcUCuGGcUCUCCGCGAggcguucccucgcacCCGGCg -3'
miRNA:   3'- -UGUGGCuGGuCC-AGAGGCGCU---------------GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 16288 0.7 0.26575
Target:  5'- aACACCGACCGGcgugcagcccagacGcucucccugCUCCGCGA-CGGCa -3'
miRNA:   3'- -UGUGGCUGGUC--------------Ca--------GAGGCGCUgGCCG- -5'
18703 5' -60.3 NC_004682.1 + 33593 0.7 0.254824
Target:  5'- aACGCgGGCCAGGcgUUCGCGaaGCUGGCc -3'
miRNA:   3'- -UGUGgCUGGUCCagAGGCGC--UGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.