miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18703 5' -60.3 NC_004682.1 + 590 0.68 0.364421
Target:  5'- cAUACgGAgaCAGGUgCUCCGUGACgCGGg -3'
miRNA:   3'- -UGUGgCUg-GUCCA-GAGGCGCUG-GCCg -5'
18703 5' -60.3 NC_004682.1 + 934 0.71 0.224819
Target:  5'- cCACCGAgaAGGUCaCCGCcAUCGGCa -3'
miRNA:   3'- uGUGGCUggUCCAGaGGCGcUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 1073 0.69 0.295075
Target:  5'- -gACCGAUaCAGGUCUCUGaCGAUgGGa -3'
miRNA:   3'- ugUGGCUG-GUCCAGAGGC-GCUGgCCg -5'
18703 5' -60.3 NC_004682.1 + 3205 0.66 0.444253
Target:  5'- uGCGCCGccugcGCCAGuGaUCgacCCGUaACCGGCg -3'
miRNA:   3'- -UGUGGC-----UGGUC-C-AGa--GGCGcUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 5100 0.75 0.126349
Target:  5'- cGCACCGACCcccguGGUCgacgCCGCGccgaucCUGGCg -3'
miRNA:   3'- -UGUGGCUGGu----CCAGa---GGCGCu-----GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 6257 0.68 0.332267
Target:  5'- gACGCCGACCuccGGG-CUCUG-GGCCuggaGGCg -3'
miRNA:   3'- -UGUGGCUGG---UCCaGAGGCgCUGG----CCG- -5'
18703 5' -60.3 NC_004682.1 + 6328 0.68 0.348079
Target:  5'- -gGCCGACCcgcuGGGUCcgggacuccCCGcCGACaCGGCg -3'
miRNA:   3'- ugUGGCUGG----UCCAGa--------GGC-GCUG-GCCG- -5'
18703 5' -60.3 NC_004682.1 + 8076 0.66 0.4349
Target:  5'- -gAUCGACauCAGGaUCU-CGuCGACCGGCa -3'
miRNA:   3'- ugUGGCUG--GUCC-AGAgGC-GCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 8410 0.68 0.356184
Target:  5'- cCGCaagaaGAuCCAGGUCaaCGCGAcccCCGGCa -3'
miRNA:   3'- uGUGg----CU-GGUCCAGagGCGCU---GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 8648 0.66 0.443313
Target:  5'- gACGCCG-CCGucugcgcGGUCcUCGCGuuCGGCg -3'
miRNA:   3'- -UGUGGCuGGU-------CCAGaGGCGCugGCCG- -5'
18703 5' -60.3 NC_004682.1 + 10716 0.72 0.197867
Target:  5'- gGCACCaGGCaCAGGUCUCU-CGACCaguGGCc -3'
miRNA:   3'- -UGUGG-CUG-GUCCAGAGGcGCUGG---CCG- -5'
18703 5' -60.3 NC_004682.1 + 11746 0.66 0.471998
Target:  5'- uCGCCcGCaAGGUC-CCGaugggucCGACCGGCa -3'
miRNA:   3'- uGUGGcUGgUCCAGaGGC-------GCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 11789 0.68 0.356184
Target:  5'- cCACUgGACCGGugccGUCUCgGCGucguggACCGGCg -3'
miRNA:   3'- uGUGG-CUGGUC----CAGAGgCGC------UGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 12260 0.73 0.156422
Target:  5'- uACACCGAgCAGGUCggCGCGAUCcgugagGGCc -3'
miRNA:   3'- -UGUGGCUgGUCCAGagGCGCUGG------CCG- -5'
18703 5' -60.3 NC_004682.1 + 12574 0.67 0.407541
Target:  5'- -gACCGACCAGGUCg-CG-GGCaCGGa -3'
miRNA:   3'- ugUGGCUGGUCCAGagGCgCUG-GCCg -5'
18703 5' -60.3 NC_004682.1 + 14664 0.71 0.213682
Target:  5'- gACACCGGCCuguGGa---CGcCGACCGGCu -3'
miRNA:   3'- -UGUGGCUGGu--CCagagGC-GCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 16288 0.7 0.26575
Target:  5'- aACACCGACCGGcgugcagcccagacGcucucccugCUCCGCGA-CGGCa -3'
miRNA:   3'- -UGUGGCUGGUC--------------Ca--------GAGGCGCUgGCCG- -5'
18703 5' -60.3 NC_004682.1 + 17682 0.67 0.398664
Target:  5'- aGCAgCGAgcCCAGcGUgUCCGCGagcguggugaacGCUGGCg -3'
miRNA:   3'- -UGUgGCU--GGUC-CAgAGGCGC------------UGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 18330 0.66 0.453718
Target:  5'- gGCACCGacaGCCAGGUCgau---ACCGGCc -3'
miRNA:   3'- -UGUGGC---UGGUCCAGaggcgcUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 18815 1.11 0.000252
Target:  5'- uACACCGACCAGGUCUCCGCGACCGGCa -3'
miRNA:   3'- -UGUGGCUGGUCCAGAGGCGCUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.