miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18703 5' -60.3 NC_004682.1 + 22077 0.75 0.110367
Target:  5'- gACACCGugUucguggagcGGGUCUCCaaGAUCGGCu -3'
miRNA:   3'- -UGUGGCugG---------UCCAGAGGcgCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 22660 0.66 0.451816
Target:  5'- -uGCCGAacgUCAGGaagccucaucggCUUCGgGGCCGGCg -3'
miRNA:   3'- ugUGGCU---GGUCCa-----------GAGGCgCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 22919 0.67 0.398664
Target:  5'- cGCACCaGCgCGGG-CUCCGgGACCuucuuccgGGCc -3'
miRNA:   3'- -UGUGGcUG-GUCCaGAGGCgCUGG--------CCG- -5'
18703 5' -60.3 NC_004682.1 + 23900 0.75 0.127716
Target:  5'- gGCACCGGCCAcacccccgaggacgcGG-CUgCCGCGAUgGGCa -3'
miRNA:   3'- -UGUGGCUGGU---------------CCaGA-GGCGCUGgCCG- -5'
18703 5' -60.3 NC_004682.1 + 24499 0.71 0.23057
Target:  5'- gACACCGcuggcaucaGCCAGGUCggCGCGgacuACCGGg -3'
miRNA:   3'- -UGUGGC---------UGGUCCAGagGCGC----UGGCCg -5'
18703 5' -60.3 NC_004682.1 + 25579 0.68 0.348079
Target:  5'- cCACCGGCUgAGGUgUgUGCG-CUGGCg -3'
miRNA:   3'- uGUGGCUGG-UCCAgAgGCGCuGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 26169 0.67 0.372789
Target:  5'- uUACCGAgaAGGUCUUCGU-ACCGGg -3'
miRNA:   3'- uGUGGCUggUCCAGAGGCGcUGGCCg -5'
18703 5' -60.3 NC_004682.1 + 29299 0.66 0.433971
Target:  5'- cGCAgCGAugagcuuCCGGGUCUCCugGUGGUCGGUg -3'
miRNA:   3'- -UGUgGCU-------GGUCCAGAGG--CGCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 30180 0.73 0.156422
Target:  5'- gGCACCGacGCCAGGaUCUCguCGUGgAUCGGCa -3'
miRNA:   3'- -UGUGGC--UGGUCC-AGAG--GCGC-UGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 30303 0.69 0.288037
Target:  5'- aGCGCCGAgUAGG-C-CCGUGAggggucuaCCGGCa -3'
miRNA:   3'- -UGUGGCUgGUCCaGaGGCGCU--------GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 30739 0.66 0.453718
Target:  5'- cUACCaGGcCCAGGaaCUCCGCGucCUGGCc -3'
miRNA:   3'- uGUGG-CU-GGUCCa-GAGGCGCu-GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 31473 0.66 0.425662
Target:  5'- cCACCaggugGGCCAGGaUCUUCGUG-UCGGUg -3'
miRNA:   3'- uGUGG-----CUGGUCC-AGAGGCGCuGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 32800 0.67 0.420175
Target:  5'- uACGCCGagGCC-GGUCUgggucggaagaaggcCCGCGAagCGGCc -3'
miRNA:   3'- -UGUGGC--UGGuCCAGA---------------GGCGCUg-GCCG- -5'
18703 5' -60.3 NC_004682.1 + 33593 0.7 0.254824
Target:  5'- aACGCgGGCCAGGcgUUCGCGaaGCUGGCc -3'
miRNA:   3'- -UGUGgCUGGUCCagAGGCGC--UGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 34778 0.68 0.348079
Target:  5'- aACGCCG-CCAGGUUgaCGUGGCCcaGGUu -3'
miRNA:   3'- -UGUGGCuGGUCCAGagGCGCUGG--CCG- -5'
18703 5' -60.3 NC_004682.1 + 35418 0.68 0.364421
Target:  5'- gGCACCGGCCcagucgGGGUCguacUCCGuCGACaGGa -3'
miRNA:   3'- -UGUGGCUGG------UCCAG----AGGC-GCUGgCCg -5'
18703 5' -60.3 NC_004682.1 + 35809 0.74 0.140651
Target:  5'- cGCACCGuuuccgGCCAGGUCUCCuuaGACCcaucgGGCu -3'
miRNA:   3'- -UGUGGC------UGGUCCAGAGGcg-CUGG-----CCG- -5'
18703 5' -60.3 NC_004682.1 + 36002 0.66 0.470056
Target:  5'- aACAUCGGCUucucaugcgggaagAGGUCcgggacgaUCUGCGcCCGGUa -3'
miRNA:   3'- -UGUGGCUGG--------------UCCAG--------AGGCGCuGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 37554 0.67 0.370265
Target:  5'- -gGCCGGCgucggguaguccauCAGGUCUCCGauguggagcaacUGAuCCGGCu -3'
miRNA:   3'- ugUGGCUG--------------GUCCAGAGGC------------GCU-GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 39934 0.68 0.356184
Target:  5'- gGCcuguCCGAUCAGaucGUCccgUUCGCGGCUGGCa -3'
miRNA:   3'- -UGu---GGCUGGUC---CAG---AGGCGCUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.