miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18703 5' -60.3 NC_004682.1 + 48318 0.68 0.364421
Target:  5'- cCGCCaauGACCAaGGUg-UCGCGGCUGGCc -3'
miRNA:   3'- uGUGG---CUGGU-CCAgaGGCGCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 47700 0.72 0.178376
Target:  5'- -gAUCGGCCuggcugaaggcaAGGUCUCCGaGGCCGGUc -3'
miRNA:   3'- ugUGGCUGG------------UCCAGAGGCgCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 46689 0.66 0.463292
Target:  5'- gACGCCGAagaugugcagcaCCGGGUa-CCGCGugCcGCu -3'
miRNA:   3'- -UGUGGCU------------GGUCCAgaGGCGCugGcCG- -5'
18703 5' -60.3 NC_004682.1 + 46450 0.69 0.283878
Target:  5'- cGCGCUGcUCuGGcUCUCCGCGAggcguucccucgcacCCGGCg -3'
miRNA:   3'- -UGUGGCuGGuCC-AGAGGCGCU---------------GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 46067 0.68 0.324561
Target:  5'- aACGUCGACCAGGUgaagUCCGCG-CUGGa -3'
miRNA:   3'- -UGUGGCUGGUCCAg---AGGCGCuGGCCg -5'
18703 5' -60.3 NC_004682.1 + 46066 0.66 0.444253
Target:  5'- cGCAgCGGCagugcuGGUCUCCGCaGucgUCGGCu -3'
miRNA:   3'- -UGUgGCUGgu----CCAGAGGCG-Cu--GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 45621 0.68 0.336954
Target:  5'- cACGCCGGCCccggcgcaggcGGGUCcaacuugugaacaCCGCaGugCGGCg -3'
miRNA:   3'- -UGUGGCUGG-----------UCCAGa------------GGCG-CugGCCG- -5'
18703 5' -60.3 NC_004682.1 + 44380 0.66 0.453718
Target:  5'- gACuCCGACCcGGUCUacgagaaCGUGGCCGa- -3'
miRNA:   3'- -UGuGGCUGGuCCAGAg------GCGCUGGCcg -5'
18703 5' -60.3 NC_004682.1 + 44248 0.66 0.47687
Target:  5'- uCAUCGACUAGGUCucUggcuaucagcccaacCCGUGACCGcuGCa -3'
miRNA:   3'- uGUGGCUGGUCCAG--A---------------GGCGCUGGC--CG- -5'
18703 5' -60.3 NC_004682.1 + 43079 0.66 0.471998
Target:  5'- -aGCCGgggACCgAGGUCUCCaucaaggGCGAgCgCGGCa -3'
miRNA:   3'- ugUGGC---UGG-UCCAGAGG-------CGCU-G-GCCG- -5'
18703 5' -60.3 NC_004682.1 + 41742 0.66 0.482749
Target:  5'- -aGCCGGUCAGGaUCgacaGCGACCGGg -3'
miRNA:   3'- ugUGGCUGGUCC-AGagg-CGCUGGCCg -5'
18703 5' -60.3 NC_004682.1 + 41468 0.66 0.463292
Target:  5'- gACGCCGACaAGGcgaUC-CCGCuGuCCGGUg -3'
miRNA:   3'- -UGUGGCUGgUCC---AGaGGCG-CuGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 41400 0.71 0.21919
Target:  5'- gACGCUGcACCGGGUCUCagaGCaGuuCGGCu -3'
miRNA:   3'- -UGUGGC-UGGUCCAGAGg--CG-CugGCCG- -5'
18703 5' -60.3 NC_004682.1 + 39934 0.68 0.356184
Target:  5'- gGCcuguCCGAUCAGaucGUCccgUUCGCGGCUGGCa -3'
miRNA:   3'- -UGu---GGCUGGUC---CAG---AGGCGCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 37554 0.67 0.370265
Target:  5'- -gGCCGGCgucggguaguccauCAGGUCUCCGauguggagcaacUGAuCCGGCu -3'
miRNA:   3'- ugUGGCUG--------------GUCCAGAGGC------------GCU-GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 36002 0.66 0.470056
Target:  5'- aACAUCGGCUucucaugcgggaagAGGUCcgggacgaUCUGCGcCCGGUa -3'
miRNA:   3'- -UGUGGCUGG--------------UCCAG--------AGGCGCuGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 35809 0.74 0.140651
Target:  5'- cGCACCGuuuccgGCCAGGUCUCCuuaGACCcaucgGGCu -3'
miRNA:   3'- -UGUGGC------UGGUCCAGAGGcg-CUGG-----CCG- -5'
18703 5' -60.3 NC_004682.1 + 35418 0.68 0.364421
Target:  5'- gGCACCGGCCcagucgGGGUCguacUCCGuCGACaGGa -3'
miRNA:   3'- -UGUGGCUGG------UCCAG----AGGC-GCUGgCCg -5'
18703 5' -60.3 NC_004682.1 + 34778 0.68 0.348079
Target:  5'- aACGCCG-CCAGGUUgaCGUGGCCcaGGUu -3'
miRNA:   3'- -UGUGGCuGGUCCAGagGCGCUGG--CCG- -5'
18703 5' -60.3 NC_004682.1 + 33593 0.7 0.254824
Target:  5'- aACGCgGGCCAGGcgUUCGCGaaGCUGGCc -3'
miRNA:   3'- -UGUGgCUGGUCCagAGGCGC--UGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.