miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18703 5' -60.3 NC_004682.1 + 37554 0.67 0.370265
Target:  5'- -gGCCGGCgucggguaguccauCAGGUCUCCGauguggagcaacUGAuCCGGCu -3'
miRNA:   3'- ugUGGCUG--------------GUCCAGAGGC------------GCU-GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 6257 0.68 0.332267
Target:  5'- gACGCCGACCuccGGG-CUCUG-GGCCuggaGGCg -3'
miRNA:   3'- -UGUGGCUGG---UCCaGAGGCgCUGG----CCG- -5'
18703 5' -60.3 NC_004682.1 + 25579 0.68 0.348079
Target:  5'- cCACCGGCUgAGGUgUgUGCG-CUGGCg -3'
miRNA:   3'- uGUGGCUGG-UCCAgAgGCGCuGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 34778 0.68 0.348079
Target:  5'- aACGCCG-CCAGGUUgaCGUGGCCcaGGUu -3'
miRNA:   3'- -UGUGGCuGGUCCAGagGCGCUGG--CCG- -5'
18703 5' -60.3 NC_004682.1 + 6328 0.68 0.348079
Target:  5'- -gGCCGACCcgcuGGGUCcgggacuccCCGcCGACaCGGCg -3'
miRNA:   3'- ugUGGCUGG----UCCAGa--------GGC-GCUG-GCCG- -5'
18703 5' -60.3 NC_004682.1 + 8410 0.68 0.356184
Target:  5'- cCGCaagaaGAuCCAGGUCaaCGCGAcccCCGGCa -3'
miRNA:   3'- uGUGg----CU-GGUCCAGagGCGCU---GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 11789 0.68 0.356184
Target:  5'- cCACUgGACCGGugccGUCUCgGCGucguggACCGGCg -3'
miRNA:   3'- uGUGG-CUGGUC----CAGAGgCGC------UGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 590 0.68 0.364421
Target:  5'- cAUACgGAgaCAGGUgCUCCGUGACgCGGg -3'
miRNA:   3'- -UGUGgCUg-GUCCA-GAGGCGCUG-GCCg -5'
18703 5' -60.3 NC_004682.1 + 35418 0.68 0.364421
Target:  5'- gGCACCGGCCcagucgGGGUCguacUCCGuCGACaGGa -3'
miRNA:   3'- -UGUGGCUGG------UCCAG----AGGC-GCUGgCCg -5'
18703 5' -60.3 NC_004682.1 + 30303 0.69 0.288037
Target:  5'- aGCGCCGAgUAGG-C-CCGUGAggggucuaCCGGCa -3'
miRNA:   3'- -UGUGGCUgGUCCaGaGGCGCU--------GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 16288 0.7 0.26575
Target:  5'- aACACCGACCGGcgugcagcccagacGcucucccugCUCCGCGA-CGGCa -3'
miRNA:   3'- -UGUGGCUGGUC--------------Ca--------GAGGCGCUgGCCG- -5'
18703 5' -60.3 NC_004682.1 + 24499 0.71 0.23057
Target:  5'- gACACCGcuggcaucaGCCAGGUCggCGCGgacuACCGGg -3'
miRNA:   3'- -UGUGGC---------UGGUCCAGagGCGC----UGGCCg -5'
18703 5' -60.3 NC_004682.1 + 22077 0.75 0.110367
Target:  5'- gACACCGugUucguggagcGGGUCUCCaaGAUCGGCu -3'
miRNA:   3'- -UGUGGCugG---------UCCAGAGGcgCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 5100 0.75 0.126349
Target:  5'- cGCACCGACCcccguGGUCgacgCCGCGccgaucCUGGCg -3'
miRNA:   3'- -UGUGGCUGGu----CCAGa---GGCGCu-----GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 23900 0.75 0.127716
Target:  5'- gGCACCGGCCAcacccccgaggacgcGG-CUgCCGCGAUgGGCa -3'
miRNA:   3'- -UGUGGCUGGU---------------CCaGA-GGCGCUGgCCG- -5'
18703 5' -60.3 NC_004682.1 + 35809 0.74 0.140651
Target:  5'- cGCACCGuuuccgGCCAGGUCUCCuuaGACCcaucgGGCu -3'
miRNA:   3'- -UGUGGC------UGGUCCAGAGGcg-CUGG-----CCG- -5'
18703 5' -60.3 NC_004682.1 + 12260 0.73 0.156422
Target:  5'- uACACCGAgCAGGUCggCGCGAUCcgugagGGCc -3'
miRNA:   3'- -UGUGGCUgGUCCAGagGCGCUGG------CCG- -5'
18703 5' -60.3 NC_004682.1 + 30180 0.73 0.156422
Target:  5'- gGCACCGacGCCAGGaUCUCguCGUGgAUCGGCa -3'
miRNA:   3'- -UGUGGC--UGGUCC-AGAG--GCGC-UGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 14664 0.71 0.213682
Target:  5'- gACACCGGCCuguGGa---CGcCGACCGGCu -3'
miRNA:   3'- -UGUGGCUGGu--CCagagGC-GCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 934 0.71 0.224819
Target:  5'- cCACCGAgaAGGUCaCCGCcAUCGGCa -3'
miRNA:   3'- uGUGGCUggUCCAGaGGCGcUGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.