Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18703 | 5' | -60.3 | NC_004682.1 | + | 23900 | 0.75 | 0.127716 |
Target: 5'- gGCACCGGCCAcacccccgaggacgcGG-CUgCCGCGAUgGGCa -3' miRNA: 3'- -UGUGGCUGGU---------------CCaGA-GGCGCUGgCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 35809 | 0.74 | 0.140651 |
Target: 5'- cGCACCGuuuccgGCCAGGUCUCCuuaGACCcaucgGGCu -3' miRNA: 3'- -UGUGGC------UGGUCCAGAGGcg-CUGG-----CCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 12260 | 0.73 | 0.156422 |
Target: 5'- uACACCGAgCAGGUCggCGCGAUCcgugagGGCc -3' miRNA: 3'- -UGUGGCUgGUCCAGagGCGCUGG------CCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 30180 | 0.73 | 0.156422 |
Target: 5'- gGCACCGacGCCAGGaUCUCguCGUGgAUCGGCa -3' miRNA: 3'- -UGUGGC--UGGUCC-AGAG--GCGC-UGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 14664 | 0.71 | 0.213682 |
Target: 5'- gACACCGGCCuguGGa---CGcCGACCGGCu -3' miRNA: 3'- -UGUGGCUGGu--CCagagGC-GCUGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 25579 | 0.68 | 0.348079 |
Target: 5'- cCACCGGCUgAGGUgUgUGCG-CUGGCg -3' miRNA: 3'- uGUGGCUGG-UCCAgAgGCGCuGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 6257 | 0.68 | 0.332267 |
Target: 5'- gACGCCGACCuccGGG-CUCUG-GGCCuggaGGCg -3' miRNA: 3'- -UGUGGCUGG---UCCaGAGGCgCUGG----CCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 30303 | 0.69 | 0.288037 |
Target: 5'- aGCGCCGAgUAGG-C-CCGUGAggggucuaCCGGCa -3' miRNA: 3'- -UGUGGCUgGUCCaGaGGCGCU--------GGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 16288 | 0.7 | 0.26575 |
Target: 5'- aACACCGACCGGcgugcagcccagacGcucucccugCUCCGCGA-CGGCa -3' miRNA: 3'- -UGUGGCUGGUC--------------Ca--------GAGGCGCUgGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 24499 | 0.71 | 0.23057 |
Target: 5'- gACACCGcuggcaucaGCCAGGUCggCGCGgacuACCGGg -3' miRNA: 3'- -UGUGGC---------UGGUCCAGagGCGC----UGGCCg -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 934 | 0.71 | 0.224819 |
Target: 5'- cCACCGAgaAGGUCaCCGCcAUCGGCa -3' miRNA: 3'- uGUGGCUggUCCAGaGGCGcUGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 32800 | 0.67 | 0.420175 |
Target: 5'- uACGCCGagGCC-GGUCUgggucggaagaaggcCCGCGAagCGGCc -3' miRNA: 3'- -UGUGGC--UGGuCCAGA---------------GGCGCUg-GCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 8076 | 0.66 | 0.4349 |
Target: 5'- -gAUCGACauCAGGaUCU-CGuCGACCGGCa -3' miRNA: 3'- ugUGGCUG--GUCC-AGAgGC-GCUGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 3205 | 0.66 | 0.444253 |
Target: 5'- uGCGCCGccugcGCCAGuGaUCgacCCGUaACCGGCg -3' miRNA: 3'- -UGUGGC-----UGGUC-C-AGa--GGCGcUGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 22660 | 0.66 | 0.451816 |
Target: 5'- -uGCCGAacgUCAGGaagccucaucggCUUCGgGGCCGGCg -3' miRNA: 3'- ugUGGCU---GGUCCa-----------GAGGCgCUGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 30739 | 0.66 | 0.453718 |
Target: 5'- cUACCaGGcCCAGGaaCUCCGCGucCUGGCc -3' miRNA: 3'- uGUGG-CU-GGUCCa-GAGGCGCu-GGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 18330 | 0.66 | 0.453718 |
Target: 5'- gGCACCGacaGCCAGGUCgau---ACCGGCc -3' miRNA: 3'- -UGUGGC---UGGUCCAGaggcgcUGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 44380 | 0.66 | 0.453718 |
Target: 5'- gACuCCGACCcGGUCUacgagaaCGUGGCCGa- -3' miRNA: 3'- -UGuGGCUGGuCCAGAg------GCGCUGGCcg -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 41468 | 0.66 | 0.463292 |
Target: 5'- gACGCCGACaAGGcgaUC-CCGCuGuCCGGUg -3' miRNA: 3'- -UGUGGCUGgUCC---AGaGGCG-CuGGCCG- -5' |
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18703 | 5' | -60.3 | NC_004682.1 | + | 47700 | 0.72 | 0.178376 |
Target: 5'- -gAUCGGCCuggcugaaggcaAGGUCUCCGaGGCCGGUc -3' miRNA: 3'- ugUGGCUGG------------UCCAGAGGCgCUGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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