miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18703 5' -60.3 NC_004682.1 + 43079 0.66 0.471998
Target:  5'- -aGCCGgggACCgAGGUCUCCaucaaggGCGAgCgCGGCa -3'
miRNA:   3'- ugUGGC---UGG-UCCAGAGG-------CGCU-G-GCCG- -5'
18703 5' -60.3 NC_004682.1 + 46450 0.69 0.283878
Target:  5'- cGCGCUGcUCuGGcUCUCCGCGAggcguucccucgcacCCGGCg -3'
miRNA:   3'- -UGUGGCuGGuCC-AGAGGCGCU---------------GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 41400 0.71 0.21919
Target:  5'- gACGCUGcACCGGGUCUCagaGCaGuuCGGCu -3'
miRNA:   3'- -UGUGGC-UGGUCCAGAGg--CG-CugGCCG- -5'
18703 5' -60.3 NC_004682.1 + 47700 0.72 0.178376
Target:  5'- -gAUCGGCCuggcugaaggcaAGGUCUCCGaGGCCGGUc -3'
miRNA:   3'- ugUGGCUGG------------UCCAGAGGCgCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 30739 0.66 0.453718
Target:  5'- cUACCaGGcCCAGGaaCUCCGCGucCUGGCc -3'
miRNA:   3'- uGUGG-CU-GGUCCa-GAGGCGCu-GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 22660 0.66 0.451816
Target:  5'- -uGCCGAacgUCAGGaagccucaucggCUUCGgGGCCGGCg -3'
miRNA:   3'- ugUGGCU---GGUCCa-----------GAGGCgCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 8076 0.66 0.4349
Target:  5'- -gAUCGACauCAGGaUCU-CGuCGACCGGCa -3'
miRNA:   3'- ugUGGCUG--GUCC-AGAgGC-GCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 32800 0.67 0.420175
Target:  5'- uACGCCGagGCC-GGUCUgggucggaagaaggcCCGCGAagCGGCc -3'
miRNA:   3'- -UGUGGC--UGGuCCAGA---------------GGCGCUg-GCCG- -5'
18703 5' -60.3 NC_004682.1 + 26169 0.67 0.372789
Target:  5'- uUACCGAgaAGGUCUUCGU-ACCGGg -3'
miRNA:   3'- uGUGGCUggUCCAGAGGCGcUGGCCg -5'
18703 5' -60.3 NC_004682.1 + 1073 0.69 0.295075
Target:  5'- -gACCGAUaCAGGUCUCUGaCGAUgGGa -3'
miRNA:   3'- ugUGGCUG-GUCCAGAGGC-GCUGgCCg -5'
18703 5' -60.3 NC_004682.1 + 39934 0.68 0.356184
Target:  5'- gGCcuguCCGAUCAGaucGUCccgUUCGCGGCUGGCa -3'
miRNA:   3'- -UGu---GGCUGGUC---CAG---AGGCGCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 22919 0.67 0.398664
Target:  5'- cGCACCaGCgCGGG-CUCCGgGACCuucuuccgGGCc -3'
miRNA:   3'- -UGUGGcUG-GUCCaGAGGCgCUGG--------CCG- -5'
18703 5' -60.3 NC_004682.1 + 41468 0.66 0.463292
Target:  5'- gACGCCGACaAGGcgaUC-CCGCuGuCCGGUg -3'
miRNA:   3'- -UGUGGCUGgUCC---AGaGGCG-CuGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 45621 0.68 0.336954
Target:  5'- cACGCCGGCCccggcgcaggcGGGUCcaacuugugaacaCCGCaGugCGGCg -3'
miRNA:   3'- -UGUGGCUGG-----------UCCAGa------------GGCG-CugGCCG- -5'
18703 5' -60.3 NC_004682.1 + 44380 0.66 0.453718
Target:  5'- gACuCCGACCcGGUCUacgagaaCGUGGCCGa- -3'
miRNA:   3'- -UGuGGCUGGuCCAGAg------GCGCUGGCcg -5'
18703 5' -60.3 NC_004682.1 + 17682 0.67 0.398664
Target:  5'- aGCAgCGAgcCCAGcGUgUCCGCGagcguggugaacGCUGGCg -3'
miRNA:   3'- -UGUgGCU--GGUC-CAgAGGCGC------------UGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 46067 0.68 0.324561
Target:  5'- aACGUCGACCAGGUgaagUCCGCG-CUGGa -3'
miRNA:   3'- -UGUGGCUGGUCCAg---AGGCGCuGGCCg -5'
18703 5' -60.3 NC_004682.1 + 33593 0.7 0.254824
Target:  5'- aACGCgGGCCAGGcgUUCGCGaaGCUGGCc -3'
miRNA:   3'- -UGUGgCUGGUCCagAGGCGC--UGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 18330 0.66 0.453718
Target:  5'- gGCACCGacaGCCAGGUCgau---ACCGGCc -3'
miRNA:   3'- -UGUGGC---UGGUCCAGaggcgcUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 3205 0.66 0.444253
Target:  5'- uGCGCCGccugcGCCAGuGaUCgacCCGUaACCGGCg -3'
miRNA:   3'- -UGUGGC-----UGGUC-C-AGa--GGCGcUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.