miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18703 5' -60.3 NC_004682.1 + 10716 0.72 0.197867
Target:  5'- gGCACCaGGCaCAGGUCUCU-CGACCaguGGCc -3'
miRNA:   3'- -UGUGG-CUG-GUCCAGAGGcGCUGG---CCG- -5'
18703 5' -60.3 NC_004682.1 + 17682 0.67 0.398664
Target:  5'- aGCAgCGAgcCCAGcGUgUCCGCGagcguggugaacGCUGGCg -3'
miRNA:   3'- -UGUgGCU--GGUC-CAgAGGCGC------------UGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 11746 0.66 0.471998
Target:  5'- uCGCCcGCaAGGUC-CCGaugggucCGACCGGCa -3'
miRNA:   3'- uGUGGcUGgUCCAGaGGC-------GCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 44248 0.66 0.47687
Target:  5'- uCAUCGACUAGGUCucUggcuaucagcccaacCCGUGACCGcuGCa -3'
miRNA:   3'- uGUGGCUGGUCCAG--A---------------GGCGCUGGC--CG- -5'
18703 5' -60.3 NC_004682.1 + 12260 0.73 0.156422
Target:  5'- uACACCGAgCAGGUCggCGCGAUCcgugagGGCc -3'
miRNA:   3'- -UGUGGCUgGUCCAGagGCGCUGG------CCG- -5'
18703 5' -60.3 NC_004682.1 + 41742 0.66 0.482749
Target:  5'- -aGCCGGUCAGGaUCgacaGCGACCGGg -3'
miRNA:   3'- ugUGGCUGGUCC-AGagg-CGCUGGCCg -5'
18703 5' -60.3 NC_004682.1 + 36002 0.66 0.470056
Target:  5'- aACAUCGGCUucucaugcgggaagAGGUCcgggacgaUCUGCGcCCGGUa -3'
miRNA:   3'- -UGUGGCUGG--------------UCCAG--------AGGCGCuGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 46689 0.66 0.463292
Target:  5'- gACGCCGAagaugugcagcaCCGGGUa-CCGCGugCcGCu -3'
miRNA:   3'- -UGUGGCU------------GGUCCAgaGGCGCugGcCG- -5'
18703 5' -60.3 NC_004682.1 + 30180 0.73 0.156422
Target:  5'- gGCACCGacGCCAGGaUCUCguCGUGgAUCGGCa -3'
miRNA:   3'- -UGUGGC--UGGUCC-AGAG--GCGC-UGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 16288 0.7 0.26575
Target:  5'- aACACCGACCGGcgugcagcccagacGcucucccugCUCCGCGA-CGGCa -3'
miRNA:   3'- -UGUGGCUGGUC--------------Ca--------GAGGCGCUgGCCG- -5'
18703 5' -60.3 NC_004682.1 + 30303 0.69 0.288037
Target:  5'- aGCGCCGAgUAGG-C-CCGUGAggggucuaCCGGCa -3'
miRNA:   3'- -UGUGGCUgGUCCaGaGGCGCU--------GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 6257 0.68 0.332267
Target:  5'- gACGCCGACCuccGGG-CUCUG-GGCCuggaGGCg -3'
miRNA:   3'- -UGUGGCUGG---UCCaGAGGCgCUGG----CCG- -5'
18703 5' -60.3 NC_004682.1 + 25579 0.68 0.348079
Target:  5'- cCACCGGCUgAGGUgUgUGCG-CUGGCg -3'
miRNA:   3'- uGUGGCUGG-UCCAgAgGCGCuGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 34778 0.68 0.348079
Target:  5'- aACGCCG-CCAGGUUgaCGUGGCCcaGGUu -3'
miRNA:   3'- -UGUGGCuGGUCCAGagGCGCUGG--CCG- -5'
18703 5' -60.3 NC_004682.1 + 37554 0.67 0.370265
Target:  5'- -gGCCGGCgucggguaguccauCAGGUCUCCGauguggagcaacUGAuCCGGCu -3'
miRNA:   3'- ugUGGCUG--------------GUCCAGAGGC------------GCU-GGCCG- -5'
18703 5' -60.3 NC_004682.1 + 12574 0.67 0.407541
Target:  5'- -gACCGACCAGGUCg-CG-GGCaCGGa -3'
miRNA:   3'- ugUGGCUGGUCCAGagGCgCUG-GCCg -5'
18703 5' -60.3 NC_004682.1 + 31473 0.66 0.425662
Target:  5'- cCACCaggugGGCCAGGaUCUUCGUG-UCGGUg -3'
miRNA:   3'- uGUGG-----CUGGUCC-AGAGGCGCuGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 29299 0.66 0.433971
Target:  5'- cGCAgCGAugagcuuCCGGGUCUCCugGUGGUCGGUg -3'
miRNA:   3'- -UGUgGCU-------GGUCCAGAGG--CGCUGGCCG- -5'
18703 5' -60.3 NC_004682.1 + 8648 0.66 0.443313
Target:  5'- gACGCCG-CCGucugcgcGGUCcUCGCGuuCGGCg -3'
miRNA:   3'- -UGUGGCuGGU-------CCAGaGGCGCugGCCG- -5'
18703 5' -60.3 NC_004682.1 + 46066 0.66 0.444253
Target:  5'- cGCAgCGGCagugcuGGUCUCCGCaGucgUCGGCu -3'
miRNA:   3'- -UGUgGCUGgu----CCAGAGGCG-Cu--GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.