miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18704 5' -58.9 NC_004682.1 + 35176 0.66 0.491855
Target:  5'- --gGCGGUgUGCGCCGGucAGCGCGGa -3'
miRNA:   3'- aagUGCCG-GUGCGGUCucUUGCGCCa -5'
18704 5' -58.9 NC_004682.1 + 6129 0.66 0.481684
Target:  5'- -aCGCGGCCuACGCCAaGGcguacGACgGCGGg -3'
miRNA:   3'- aaGUGCCGG-UGCGGUcUC-----UUG-CGCCa -5'
18704 5' -58.9 NC_004682.1 + 43414 0.66 0.481684
Target:  5'- ---gUGGCCcCGCgAGAGGGuCGCGGa -3'
miRNA:   3'- aaguGCCGGuGCGgUCUCUU-GCGCCa -5'
18704 5' -58.9 NC_004682.1 + 20458 0.66 0.481684
Target:  5'- -cCACGGCaccaucacgACGCUGGAGGACGCu-- -3'
miRNA:   3'- aaGUGCCGg--------UGCGGUCUCUUGCGcca -5'
18704 5' -58.9 NC_004682.1 + 23986 0.66 0.442071
Target:  5'- aUCGCGgcaGCCGCGuCCuGGGggUGUGGc -3'
miRNA:   3'- aAGUGC---CGGUGC-GGuCUCuuGCGCCa -5'
18704 5' -58.9 NC_004682.1 + 5199 0.66 0.442071
Target:  5'- -cCGCaGCaCGCGCCAG-GAucgGCGCGGc -3'
miRNA:   3'- aaGUGcCG-GUGCGGUCuCU---UGCGCCa -5'
18704 5' -58.9 NC_004682.1 + 4374 0.67 0.432458
Target:  5'- gUCACcgaaGCCGcCGCCAcgggcgcGGAGCGCGGUg -3'
miRNA:   3'- aAGUGc---CGGU-GCGGUc------UCUUGCGCCA- -5'
18704 5' -58.9 NC_004682.1 + 47286 0.67 0.432458
Target:  5'- aUCuccuCGGCCAgCGCCAG-GAcuaGCGGg -3'
miRNA:   3'- aAGu---GCCGGU-GCGGUCuCUug-CGCCa -5'
18704 5' -58.9 NC_004682.1 + 7855 0.67 0.432458
Target:  5'- cUUCuCGGCCACggugucguuGCCGGGGAuguGCGCGu- -3'
miRNA:   3'- -AAGuGCCGGUG---------CGGUCUCU---UGCGCca -5'
18704 5' -58.9 NC_004682.1 + 3175 0.67 0.432458
Target:  5'- -cCACGGCgG-GCCAGG--GCGCGGg -3'
miRNA:   3'- aaGUGCCGgUgCGGUCUcuUGCGCCa -5'
18704 5' -58.9 NC_004682.1 + 19645 0.67 0.413604
Target:  5'- aUCACGGUCgAC-CCGGAGGACGgcaaGGg -3'
miRNA:   3'- aAGUGCCGG-UGcGGUCUCUUGCg---CCa -5'
18704 5' -58.9 NC_004682.1 + 18657 0.67 0.404368
Target:  5'- gUUugGGCUcguaGCGCCAGAG-ACGCu-- -3'
miRNA:   3'- aAGugCCGG----UGCGGUCUCuUGCGcca -5'
18704 5' -58.9 NC_004682.1 + 16430 0.67 0.404368
Target:  5'- --gACGGCCAgucgacCGUCGuuGAGGGCGCGGc -3'
miRNA:   3'- aagUGCCGGU------GCGGU--CUCUUGCGCCa -5'
18704 5' -58.9 NC_004682.1 + 17577 0.67 0.402537
Target:  5'- gUCACGGCgcuCACGCCAGcGuucaccacgcuCGCGGa -3'
miRNA:   3'- aAGUGCCG---GUGCGGUCuCuu---------GCGCCa -5'
18704 5' -58.9 NC_004682.1 + 3076 0.67 0.386293
Target:  5'- -cCACGggaugucgacGCCGCGUCGGAGggUGaCGGa -3'
miRNA:   3'- aaGUGC----------CGGUGCGGUCUCuuGC-GCCa -5'
18704 5' -58.9 NC_004682.1 + 49573 0.67 0.385404
Target:  5'- gUCACGGCUACGCCuacuGAGAggaaucaACGauGa -3'
miRNA:   3'- aAGUGCCGGUGCGGu---CUCU-------UGCgcCa -5'
18704 5' -58.9 NC_004682.1 + 37322 0.67 0.383629
Target:  5'- -cCACGGCCACcguGgCGGcauccggcugaaccAGAACGCGGg -3'
miRNA:   3'- aaGUGCCGGUG---CgGUC--------------UCUUGCGCCa -5'
18704 5' -58.9 NC_004682.1 + 20570 0.68 0.36876
Target:  5'- cUCugGGCCAUGaCGGuGuuccaGACGCGGUu -3'
miRNA:   3'- aAGugCCGGUGCgGUCuC-----UUGCGCCA- -5'
18704 5' -58.9 NC_004682.1 + 15794 0.68 0.335361
Target:  5'- cUCGCGGUucUACG-CAGAGAAgCGCGGc -3'
miRNA:   3'- aAGUGCCG--GUGCgGUCUCUU-GCGCCa -5'
18704 5' -58.9 NC_004682.1 + 9199 0.68 0.335361
Target:  5'- cUCugGGuCCACGCCGGGGucGAUGUucgGGUc -3'
miRNA:   3'- aAGugCC-GGUGCGGUCUC--UUGCG---CCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.