miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18704 5' -58.9 NC_004682.1 + 20222 1.04 0.00082
Target:  5'- cUUCACGGCCACGCCAGAGAACGCGGUu -3'
miRNA:   3'- -AAGUGCCGGUGCGGUCUCUUGCGCCA- -5'
18704 5' -58.9 NC_004682.1 + 25342 0.79 0.059175
Target:  5'- -aCugGGCCACGCCGuGGGccuuGACGCGGUg -3'
miRNA:   3'- aaGugCCGGUGCGGU-CUC----UUGCGCCA- -5'
18704 5' -58.9 NC_004682.1 + 1480 0.75 0.130785
Target:  5'- gUCGCGaCCGCGCCAGAGGACcaGCGaGUc -3'
miRNA:   3'- aAGUGCcGGUGCGGUCUCUUG--CGC-CA- -5'
18704 5' -58.9 NC_004682.1 + 42719 0.74 0.154241
Target:  5'- gUCGCGGCCuccaGCGUCGG-GAACGgGGUu -3'
miRNA:   3'- aAGUGCCGG----UGCGGUCuCUUGCgCCA- -5'
18704 5' -58.9 NC_004682.1 + 37980 0.71 0.212813
Target:  5'- -cUACGGCCAccCGCgAGAGAAcuuCGCGGa -3'
miRNA:   3'- aaGUGCCGGU--GCGgUCUCUU---GCGCCa -5'
18704 5' -58.9 NC_004682.1 + 21521 0.7 0.26177
Target:  5'- -cCACGGCguguaguacuCGCCGGGGAACGuCGGg -3'
miRNA:   3'- aaGUGCCGgu--------GCGGUCUCUUGC-GCCa -5'
18704 5' -58.9 NC_004682.1 + 23901 0.69 0.304227
Target:  5'- -gCAcCGGCCACaCCcccGAGGACGCGGc -3'
miRNA:   3'- aaGU-GCCGGUGcGGu--CUCUUGCGCCa -5'
18704 5' -58.9 NC_004682.1 + 98 0.69 0.327365
Target:  5'- cUCGCGGgcgaCugGaCAGAGAACGgGGUa -3'
miRNA:   3'- aAGUGCCg---GugCgGUCUCUUGCgCCA- -5'
18704 5' -58.9 NC_004682.1 + 15794 0.68 0.335361
Target:  5'- cUCGCGGUucUACG-CAGAGAAgCGCGGc -3'
miRNA:   3'- aAGUGCCG--GUGCgGUCUCUU-GCGCCa -5'
18704 5' -58.9 NC_004682.1 + 9199 0.68 0.335361
Target:  5'- cUCugGGuCCACGCCGGGGucGAUGUucgGGUc -3'
miRNA:   3'- aAGugCC-GGUGCGGUCUC--UUGCG---CCA- -5'
18704 5' -58.9 NC_004682.1 + 20570 0.68 0.36876
Target:  5'- cUCugGGCCAUGaCGGuGuuccaGACGCGGUu -3'
miRNA:   3'- aAGugCCGGUGCgGUCuC-----UUGCGCCA- -5'
18704 5' -58.9 NC_004682.1 + 37322 0.67 0.383629
Target:  5'- -cCACGGCCACcguGgCGGcauccggcugaaccAGAACGCGGg -3'
miRNA:   3'- aaGUGCCGGUG---CgGUC--------------UCUUGCGCCa -5'
18704 5' -58.9 NC_004682.1 + 49573 0.67 0.385404
Target:  5'- gUCACGGCUACGCCuacuGAGAggaaucaACGauGa -3'
miRNA:   3'- aAGUGCCGGUGCGGu---CUCU-------UGCgcCa -5'
18704 5' -58.9 NC_004682.1 + 3076 0.67 0.386293
Target:  5'- -cCACGggaugucgacGCCGCGUCGGAGggUGaCGGa -3'
miRNA:   3'- aaGUGC----------CGGUGCGGUCUCuuGC-GCCa -5'
18704 5' -58.9 NC_004682.1 + 17577 0.67 0.402537
Target:  5'- gUCACGGCgcuCACGCCAGcGuucaccacgcuCGCGGa -3'
miRNA:   3'- aAGUGCCG---GUGCGGUCuCuu---------GCGCCa -5'
18704 5' -58.9 NC_004682.1 + 16430 0.67 0.404368
Target:  5'- --gACGGCCAgucgacCGUCGuuGAGGGCGCGGc -3'
miRNA:   3'- aagUGCCGGU------GCGGU--CUCUUGCGCCa -5'
18704 5' -58.9 NC_004682.1 + 18657 0.67 0.404368
Target:  5'- gUUugGGCUcguaGCGCCAGAG-ACGCu-- -3'
miRNA:   3'- aAGugCCGG----UGCGGUCUCuUGCGcca -5'
18704 5' -58.9 NC_004682.1 + 19645 0.67 0.413604
Target:  5'- aUCACGGUCgAC-CCGGAGGACGgcaaGGg -3'
miRNA:   3'- aAGUGCCGG-UGcGGUCUCUUGCg---CCa -5'
18704 5' -58.9 NC_004682.1 + 7855 0.67 0.432458
Target:  5'- cUUCuCGGCCACggugucguuGCCGGGGAuguGCGCGu- -3'
miRNA:   3'- -AAGuGCCGGUG---------CGGUCUCU---UGCGCca -5'
18704 5' -58.9 NC_004682.1 + 4374 0.67 0.432458
Target:  5'- gUCACcgaaGCCGcCGCCAcgggcgcGGAGCGCGGUg -3'
miRNA:   3'- aAGUGc---CGGU-GCGGUc------UCUUGCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.