Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18704 | 5' | -58.9 | NC_004682.1 | + | 47286 | 0.67 | 0.432458 |
Target: 5'- aUCuccuCGGCCAgCGCCAG-GAcuaGCGGg -3' miRNA: 3'- aAGu---GCCGGU-GCGGUCuCUug-CGCCa -5' |
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18704 | 5' | -58.9 | NC_004682.1 | + | 3175 | 0.67 | 0.432458 |
Target: 5'- -cCACGGCgG-GCCAGG--GCGCGGg -3' miRNA: 3'- aaGUGCCGgUgCGGUCUcuUGCGCCa -5' |
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18704 | 5' | -58.9 | NC_004682.1 | + | 23986 | 0.66 | 0.442071 |
Target: 5'- aUCGCGgcaGCCGCGuCCuGGGggUGUGGc -3' miRNA: 3'- aAGUGC---CGGUGC-GGuCUCuuGCGCCa -5' |
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18704 | 5' | -58.9 | NC_004682.1 | + | 5199 | 0.66 | 0.442071 |
Target: 5'- -cCGCaGCaCGCGCCAG-GAucgGCGCGGc -3' miRNA: 3'- aaGUGcCG-GUGCGGUCuCU---UGCGCCa -5' |
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18704 | 5' | -58.9 | NC_004682.1 | + | 43414 | 0.66 | 0.481684 |
Target: 5'- ---gUGGCCcCGCgAGAGGGuCGCGGa -3' miRNA: 3'- aaguGCCGGuGCGgUCUCUU-GCGCCa -5' |
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18704 | 5' | -58.9 | NC_004682.1 | + | 20458 | 0.66 | 0.481684 |
Target: 5'- -cCACGGCaccaucacgACGCUGGAGGACGCu-- -3' miRNA: 3'- aaGUGCCGg--------UGCGGUCUCUUGCGcca -5' |
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18704 | 5' | -58.9 | NC_004682.1 | + | 6129 | 0.66 | 0.481684 |
Target: 5'- -aCGCGGCCuACGCCAaGGcguacGACgGCGGg -3' miRNA: 3'- aaGUGCCGG-UGCGGUcUC-----UUG-CGCCa -5' |
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18704 | 5' | -58.9 | NC_004682.1 | + | 35176 | 0.66 | 0.491855 |
Target: 5'- --gGCGGUgUGCGCCGGucAGCGCGGa -3' miRNA: 3'- aagUGCCG-GUGCGGUCucUUGCGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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