miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18705 5' -53.2 NC_004682.1 + 41336 0.66 0.823637
Target:  5'- -aCCCGgugcAGCgucaGGAUCAUC-UCGGGc -3'
miRNA:   3'- agGGGU----UCGaca-CCUAGUAGaAGCCC- -5'
18705 5' -53.2 NC_004682.1 + 30544 0.66 0.814226
Target:  5'- gCUCCGGGCUGUccuuGGUgAUCUcccggUCGGGc -3'
miRNA:   3'- aGGGGUUCGACAc---CUAgUAGA-----AGCCC- -5'
18705 5' -53.2 NC_004682.1 + 26317 0.66 0.794821
Target:  5'- aCCCCGAGCauUGGGUuggcgguguaCGUCUUCGa- -3'
miRNA:   3'- aGGGGUUCGacACCUA----------GUAGAAGCcc -5'
18705 5' -53.2 NC_004682.1 + 48944 0.66 0.794821
Target:  5'- cUCUCCGAGCaUGauGAUCAugUCUUCGcGGg -3'
miRNA:   3'- -AGGGGUUCG-ACacCUAGU--AGAAGC-CC- -5'
18705 5' -53.2 NC_004682.1 + 23438 0.67 0.753998
Target:  5'- gCCCCAGGUccguUGuUGGGguUCGggUUCGGGg -3'
miRNA:   3'- aGGGGUUCG----AC-ACCU--AGUagAAGCCC- -5'
18705 5' -53.2 NC_004682.1 + 12693 0.67 0.74025
Target:  5'- gCCCCcGGCccGUucucugucaagggaGGGUCAcuccUCUUCGGGg -3'
miRNA:   3'- aGGGGuUCGa-CA--------------CCUAGU----AGAAGCCC- -5'
18705 5' -53.2 NC_004682.1 + 40143 0.68 0.666957
Target:  5'- cUCUCGGGCgcggugGUGGAUguUC-UCGGGg -3'
miRNA:   3'- aGGGGUUCGa-----CACCUAguAGaAGCCC- -5'
18705 5' -53.2 NC_004682.1 + 2235 0.69 0.660268
Target:  5'- cUCCCUugGGGCcuUGUGGAccgguaggucccugcUCGcCUUCGGGg -3'
miRNA:   3'- -AGGGG--UUCG--ACACCU---------------AGUaGAAGCCC- -5'
18705 5' -53.2 NC_004682.1 + 26827 0.69 0.622249
Target:  5'- cCCCCGcugGGCUucaggaucGUGGAUCAcCccUCGGGg -3'
miRNA:   3'- aGGGGU---UCGA--------CACCUAGUaGa-AGCCC- -5'
18705 5' -53.2 NC_004682.1 + 13168 0.7 0.577678
Target:  5'- uUCCCCGAGgaGUGGGagAUCc-UGGGc -3'
miRNA:   3'- -AGGGGUUCgaCACCUagUAGaaGCCC- -5'
18705 5' -53.2 NC_004682.1 + 21483 0.77 0.243991
Target:  5'- cUCCCCAcaGGCcccGUGGAUCGUgUUCGaGGa -3'
miRNA:   3'- -AGGGGU--UCGa--CACCUAGUAgAAGC-CC- -5'
18705 5' -53.2 NC_004682.1 + 20900 1.11 0.001207
Target:  5'- uUCCCCAAGCUGUGGAUCAUCUUCGGGc -3'
miRNA:   3'- -AGGGGUUCGACACCUAGUAGAAGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.