Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18708 | 5' | -54.1 | NC_004682.1 | + | 39180 | 0.66 | 0.702873 |
Target: 5'- cUgCACaGcCGGUGGGUUGUCCAGGUAg -3' miRNA: 3'- uAgGUG-CaGUCAUUCGACGGGUUCGU- -5' |
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18708 | 5' | -54.1 | NC_004682.1 | + | 38523 | 0.66 | 0.669012 |
Target: 5'- cAUCC-CGaCGGUGGGCgUGCCagGAGCAc -3' miRNA: 3'- -UAGGuGCaGUCAUUCG-ACGGg-UUCGU- -5' |
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18708 | 5' | -54.1 | NC_004682.1 | + | 12990 | 0.67 | 0.657634 |
Target: 5'- uUCUuCGUCAGUGGGCugacgUGCCCAA-CGg -3' miRNA: 3'- uAGGuGCAGUCAUUCG-----ACGGGUUcGU- -5' |
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18708 | 5' | -54.1 | NC_004682.1 | + | 23906 | 0.68 | 0.566624 |
Target: 5'- -gUCAgGUCGGUGAccGCauUGCCCAGGCc -3' miRNA: 3'- uaGGUgCAGUCAUU--CG--ACGGGUUCGu -5' |
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18708 | 5' | -54.1 | NC_004682.1 | + | 11595 | 0.68 | 0.5779 |
Target: 5'- cGUUCAgCGggaGGU-GGCUGCCCGAGCc -3' miRNA: 3'- -UAGGU-GCag-UCAuUCGACGGGUUCGu -5' |
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18708 | 5' | -54.1 | NC_004682.1 | + | 14233 | 0.68 | 0.589226 |
Target: 5'- cUUCACGUCAGgcAGCgccGCCCGGa-- -3' miRNA: 3'- uAGGUGCAGUCauUCGa--CGGGUUcgu -5' |
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18708 | 5' | -54.1 | NC_004682.1 | + | 22512 | 0.69 | 0.511263 |
Target: 5'- cGUCCuCaUCAGcAAGCUGCuCCAAGUAg -3' miRNA: 3'- -UAGGuGcAGUCaUUCGACG-GGUUCGU- -5' |
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18708 | 5' | -54.1 | NC_004682.1 | + | 563 | 0.69 | 0.511263 |
Target: 5'- --gCGCGUCGGUGAGCgccGCCgGaAGCGg -3' miRNA: 3'- uagGUGCAGUCAUUCGa--CGGgU-UCGU- -5' |
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18708 | 5' | -54.1 | NC_004682.1 | + | 35167 | 0.7 | 0.43791 |
Target: 5'- -gCCGCGauacCGGUGAGCUGUCCAcccuccguAGCGa -3' miRNA: 3'- uaGGUGCa---GUCAUUCGACGGGU--------UCGU- -5' |
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18708 | 5' | -54.1 | NC_004682.1 | + | 25628 | 0.73 | 0.295712 |
Target: 5'- gGUCC-CGUCgaAGUAGcGCUGUCCGGGCGc -3' miRNA: 3'- -UAGGuGCAG--UCAUU-CGACGGGUUCGU- -5' |
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18708 | 5' | -54.1 | NC_004682.1 | + | 46255 | 0.76 | 0.197527 |
Target: 5'- cGUCCAUGUCAGcucgccAGC-GCCCGAGCGa -3' miRNA: 3'- -UAGGUGCAGUCau----UCGaCGGGUUCGU- -5' |
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18708 | 5' | -54.1 | NC_004682.1 | + | 22467 | 1.07 | 0.001232 |
Target: 5'- cAUCCACGUCAGUAAGCUGCCCAAGCAg -3' miRNA: 3'- -UAGGUGCAGUCAUUCGACGGGUUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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