miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18709 3' -56.4 NC_004682.1 + 10562 0.66 0.673422
Target:  5'- gUCACCGGCcuccuCCUGGgagaacuugacgcguGCGGGCUccauGUUCu -3'
miRNA:   3'- -AGUGGCUGau---GGGCU---------------UGCCCGG----CAAG- -5'
18709 3' -56.4 NC_004682.1 + 40753 0.66 0.669084
Target:  5'- -gACCGGCcaGCCCGAcugGCGGGCa---- -3'
miRNA:   3'- agUGGCUGa-UGGGCU---UGCCCGgcaag -5'
18709 3' -56.4 NC_004682.1 + 18086 0.66 0.669084
Target:  5'- cCACCGAUgguggcugccGCCUGAGCGaaGGCCGc-- -3'
miRNA:   3'- aGUGGCUGa---------UGGGCUUGC--CCGGCaag -5'
18709 3' -56.4 NC_004682.1 + 45935 0.66 0.669084
Target:  5'- aUCACCGACUACacuaCGAACucGCCu--- -3'
miRNA:   3'- -AGUGGCUGAUGg---GCUUGccCGGcaag -5'
18709 3' -56.4 NC_004682.1 + 48301 0.66 0.669084
Target:  5'- gUCG-CGGCUGgCCGAuACGaGGCCGgcgUCc -3'
miRNA:   3'- -AGUgGCUGAUgGGCU-UGC-CCGGCa--AG- -5'
18709 3' -56.4 NC_004682.1 + 22999 0.66 0.658218
Target:  5'- aUCACCGGCUcaACCCaGGugGuGUCGaUCg -3'
miRNA:   3'- -AGUGGCUGA--UGGG-CUugCcCGGCaAG- -5'
18709 3' -56.4 NC_004682.1 + 6300 0.66 0.647328
Target:  5'- cUCACCGuCgaccACCUGGugGGuGCggCGUUCg -3'
miRNA:   3'- -AGUGGCuGa---UGGGCUugCC-CG--GCAAG- -5'
18709 3' -56.4 NC_004682.1 + 131 0.66 0.647328
Target:  5'- -gGCuCGACcGCCgGcACGGGCCGg-- -3'
miRNA:   3'- agUG-GCUGaUGGgCuUGCCCGGCaag -5'
18709 3' -56.4 NC_004682.1 + 43847 0.66 0.625516
Target:  5'- aCACCGACgugacCCCGAACuucgacuGGUgGUUCc -3'
miRNA:   3'- aGUGGCUGau---GGGCUUGc------CCGgCAAG- -5'
18709 3' -56.4 NC_004682.1 + 17263 0.67 0.603728
Target:  5'- aCGCCuucGGCUACCUGucCGGGUcgcugaacaCGUUCg -3'
miRNA:   3'- aGUGG---CUGAUGGGCuuGCCCG---------GCAAG- -5'
18709 3' -56.4 NC_004682.1 + 5446 0.67 0.603728
Target:  5'- gCGCUGGCcgAUCUGAAgUGGGCCGgcaUCg -3'
miRNA:   3'- aGUGGCUGa-UGGGCUU-GCCCGGCa--AG- -5'
18709 3' -56.4 NC_004682.1 + 9067 0.67 0.592864
Target:  5'- aCACCGACUcCCUGGugcauGGCCGgUCg -3'
miRNA:   3'- aGUGGCUGAuGGGCUugc--CCGGCaAG- -5'
18709 3' -56.4 NC_004682.1 + 23459 0.67 0.592864
Target:  5'- uUCACCGAggACgCCGucCGGGagaUGUUCg -3'
miRNA:   3'- -AGUGGCUgaUG-GGCuuGCCCg--GCAAG- -5'
18709 3' -56.4 NC_004682.1 + 21751 0.67 0.582034
Target:  5'- cCACCGACUGCaCCGAgggACGccaucGCCGa-- -3'
miRNA:   3'- aGUGGCUGAUG-GGCU---UGCc----CGGCaag -5'
18709 3' -56.4 NC_004682.1 + 2327 0.67 0.582034
Target:  5'- gUCGCCcuucgGCCCuuGCGGGCCGg-- -3'
miRNA:   3'- -AGUGGcuga-UGGGcuUGCCCGGCaag -5'
18709 3' -56.4 NC_004682.1 + 31995 0.67 0.571244
Target:  5'- -gACCGGCUGCUCGGGCGGcGagaCGa-- -3'
miRNA:   3'- agUGGCUGAUGGGCUUGCC-Cg--GCaag -5'
18709 3' -56.4 NC_004682.1 + 27237 0.67 0.560504
Target:  5'- gUCGCCGAgcaggGCCacaCGGucguCGGGUCGUUCa -3'
miRNA:   3'- -AGUGGCUga---UGG---GCUu---GCCCGGCAAG- -5'
18709 3' -56.4 NC_004682.1 + 9444 0.68 0.549819
Target:  5'- gUCACCGacgcaGCUGCCCGGACGcugauGCUGa-- -3'
miRNA:   3'- -AGUGGC-----UGAUGGGCUUGCc----CGGCaag -5'
18709 3' -56.4 NC_004682.1 + 12416 0.68 0.539199
Target:  5'- aCGCCGACcACgCGGuugccaACGGuGCCGUUg -3'
miRNA:   3'- aGUGGCUGaUGgGCU------UGCC-CGGCAAg -5'
18709 3' -56.4 NC_004682.1 + 22746 0.68 0.518177
Target:  5'- -aGCCG-CUggACCUGAGCGaGCUGUUCg -3'
miRNA:   3'- agUGGCuGA--UGGGCUUGCcCGGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.