miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18709 3' -56.4 NC_004682.1 + 22746 0.68 0.518177
Target:  5'- -aGCCG-CUggACCUGAGCGaGCUGUUCg -3'
miRNA:   3'- agUGGCuGA--UGGGCUUGCcCGGCAAG- -5'
18709 3' -56.4 NC_004682.1 + 23639 0.69 0.487283
Target:  5'- aUCAUCGAC-ACCCuGAccgACGGGCCu--- -3'
miRNA:   3'- -AGUGGCUGaUGGG-CU---UGCCCGGcaag -5'
18709 3' -56.4 NC_004682.1 + 16975 0.69 0.477178
Target:  5'- gCGCCGACaccgGCaCCGAACGcGCCGa-- -3'
miRNA:   3'- aGUGGCUGa---UG-GGCUUGCcCGGCaag -5'
18709 3' -56.4 NC_004682.1 + 40972 0.69 0.457286
Target:  5'- aUCACCGGCaGCCgCGAcUGGGUCGc-- -3'
miRNA:   3'- -AGUGGCUGaUGG-GCUuGCCCGGCaag -5'
18709 3' -56.4 NC_004682.1 + 18322 0.69 0.456303
Target:  5'- cUCcCCGGCUaaggaagGCCCGuucuCGGGCCGa-- -3'
miRNA:   3'- -AGuGGCUGA-------UGGGCuu--GCCCGGCaag -5'
18709 3' -56.4 NC_004682.1 + 47172 0.7 0.428308
Target:  5'- aUCACUGACUACgCCGucCGGGCa---- -3'
miRNA:   3'- -AGUGGCUGAUG-GGCuuGCCCGgcaag -5'
18709 3' -56.4 NC_004682.1 + 16745 0.7 0.400443
Target:  5'- aUCACCGcuGCcGCCCGAGCGcauGCCGcgCa -3'
miRNA:   3'- -AGUGGC--UGaUGGGCUUGCc--CGGCaaG- -5'
18709 3' -56.4 NC_004682.1 + 34782 0.71 0.340108
Target:  5'- gCACCGGCUGgugacucgguuCCUGAuGCGGGCgaCGUUCu -3'
miRNA:   3'- aGUGGCUGAU-----------GGGCU-UGCCCG--GCAAG- -5'
18709 3' -56.4 NC_004682.1 + 39265 0.72 0.316343
Target:  5'- uUCAUCGACUACCUGGACaacccaccGGCUGUg- -3'
miRNA:   3'- -AGUGGCUGAUGGGCUUGc-------CCGGCAag -5'
18709 3' -56.4 NC_004682.1 + 13784 0.72 0.301208
Target:  5'- uUCACCGugUAgUCGAuGCGGGCgGUg- -3'
miRNA:   3'- -AGUGGCugAUgGGCU-UGCCCGgCAag -5'
18709 3' -56.4 NC_004682.1 + 1947 0.73 0.286638
Target:  5'- cUCGCCcgcagGGCcuugcgGCCCGAugGGGCCGg-- -3'
miRNA:   3'- -AGUGG-----CUGa-----UGGGCUugCCCGGCaag -5'
18709 3' -56.4 NC_004682.1 + 41495 0.73 0.259174
Target:  5'- aUCAgCGACUccagACCCgcGAACGGGUCGUccUCg -3'
miRNA:   3'- -AGUgGCUGA----UGGG--CUUGCCCGGCA--AG- -5'
18709 3' -56.4 NC_004682.1 + 48880 0.76 0.179689
Target:  5'- aUCGCCGGCaACCCGGACGuGCaGUUCu -3'
miRNA:   3'- -AGUGGCUGaUGGGCUUGCcCGgCAAG- -5'
18709 3' -56.4 NC_004682.1 + 24040 1.09 0.000797
Target:  5'- uUCACCGACUACCCGAACGGGCCGUUCc -3'
miRNA:   3'- -AGUGGCUGAUGGGCUUGCCCGGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.