miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18709 3' -56.4 NC_004682.1 + 131 0.66 0.647328
Target:  5'- -gGCuCGACcGCCgGcACGGGCCGg-- -3'
miRNA:   3'- agUG-GCUGaUGGgCuUGCCCGGCaag -5'
18709 3' -56.4 NC_004682.1 + 1947 0.73 0.286638
Target:  5'- cUCGCCcgcagGGCcuugcgGCCCGAugGGGCCGg-- -3'
miRNA:   3'- -AGUGG-----CUGa-----UGGGCUugCCCGGCaag -5'
18709 3' -56.4 NC_004682.1 + 2327 0.67 0.582034
Target:  5'- gUCGCCcuucgGCCCuuGCGGGCCGg-- -3'
miRNA:   3'- -AGUGGcuga-UGGGcuUGCCCGGCaag -5'
18709 3' -56.4 NC_004682.1 + 5446 0.67 0.603728
Target:  5'- gCGCUGGCcgAUCUGAAgUGGGCCGgcaUCg -3'
miRNA:   3'- aGUGGCUGa-UGGGCUU-GCCCGGCa--AG- -5'
18709 3' -56.4 NC_004682.1 + 6300 0.66 0.647328
Target:  5'- cUCACCGuCgaccACCUGGugGGuGCggCGUUCg -3'
miRNA:   3'- -AGUGGCuGa---UGGGCUugCC-CG--GCAAG- -5'
18709 3' -56.4 NC_004682.1 + 9067 0.67 0.592864
Target:  5'- aCACCGACUcCCUGGugcauGGCCGgUCg -3'
miRNA:   3'- aGUGGCUGAuGGGCUugc--CCGGCaAG- -5'
18709 3' -56.4 NC_004682.1 + 9444 0.68 0.549819
Target:  5'- gUCACCGacgcaGCUGCCCGGACGcugauGCUGa-- -3'
miRNA:   3'- -AGUGGC-----UGAUGGGCUUGCc----CGGCaag -5'
18709 3' -56.4 NC_004682.1 + 10562 0.66 0.673422
Target:  5'- gUCACCGGCcuccuCCUGGgagaacuugacgcguGCGGGCUccauGUUCu -3'
miRNA:   3'- -AGUGGCUGau---GGGCU---------------UGCCCGG----CAAG- -5'
18709 3' -56.4 NC_004682.1 + 12416 0.68 0.539199
Target:  5'- aCGCCGACcACgCGGuugccaACGGuGCCGUUg -3'
miRNA:   3'- aGUGGCUGaUGgGCU------UGCC-CGGCAAg -5'
18709 3' -56.4 NC_004682.1 + 13784 0.72 0.301208
Target:  5'- uUCACCGugUAgUCGAuGCGGGCgGUg- -3'
miRNA:   3'- -AGUGGCugAUgGGCU-UGCCCGgCAag -5'
18709 3' -56.4 NC_004682.1 + 16745 0.7 0.400443
Target:  5'- aUCACCGcuGCcGCCCGAGCGcauGCCGcgCa -3'
miRNA:   3'- -AGUGGC--UGaUGGGCUUGCc--CGGCaaG- -5'
18709 3' -56.4 NC_004682.1 + 16975 0.69 0.477178
Target:  5'- gCGCCGACaccgGCaCCGAACGcGCCGa-- -3'
miRNA:   3'- aGUGGCUGa---UG-GGCUUGCcCGGCaag -5'
18709 3' -56.4 NC_004682.1 + 17263 0.67 0.603728
Target:  5'- aCGCCuucGGCUACCUGucCGGGUcgcugaacaCGUUCg -3'
miRNA:   3'- aGUGG---CUGAUGGGCuuGCCCG---------GCAAG- -5'
18709 3' -56.4 NC_004682.1 + 18086 0.66 0.669084
Target:  5'- cCACCGAUgguggcugccGCCUGAGCGaaGGCCGc-- -3'
miRNA:   3'- aGUGGCUGa---------UGGGCUUGC--CCGGCaag -5'
18709 3' -56.4 NC_004682.1 + 18322 0.69 0.456303
Target:  5'- cUCcCCGGCUaaggaagGCCCGuucuCGGGCCGa-- -3'
miRNA:   3'- -AGuGGCUGA-------UGGGCuu--GCCCGGCaag -5'
18709 3' -56.4 NC_004682.1 + 18416 0.68 0.518177
Target:  5'- cUCACCcaGCcucgGCCCGAgaACGGGCC-UUCc -3'
miRNA:   3'- -AGUGGc-UGa---UGGGCU--UGCCCGGcAAG- -5'
18709 3' -56.4 NC_004682.1 + 21751 0.67 0.582034
Target:  5'- cCACCGACUGCaCCGAgggACGccaucGCCGa-- -3'
miRNA:   3'- aGUGGCUGAUG-GGCU---UGCc----CGGCaag -5'
18709 3' -56.4 NC_004682.1 + 22746 0.68 0.518177
Target:  5'- -aGCCG-CUggACCUGAGCGaGCUGUUCg -3'
miRNA:   3'- agUGGCuGA--UGGGCUUGCcCGGCAAG- -5'
18709 3' -56.4 NC_004682.1 + 22999 0.66 0.658218
Target:  5'- aUCACCGGCUcaACCCaGGugGuGUCGaUCg -3'
miRNA:   3'- -AGUGGCUGA--UGGG-CUugCcCGGCaAG- -5'
18709 3' -56.4 NC_004682.1 + 23459 0.67 0.592864
Target:  5'- uUCACCGAggACgCCGucCGGGagaUGUUCg -3'
miRNA:   3'- -AGUGGCUgaUG-GGCuuGCCCg--GCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.