Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18709 | 3' | -56.4 | NC_004682.1 | + | 24040 | 1.09 | 0.000797 |
Target: 5'- uUCACCGACUACCCGAACGGGCCGUUCc -3' miRNA: 3'- -AGUGGCUGAUGGGCUUGCCCGGCAAG- -5' |
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18709 | 3' | -56.4 | NC_004682.1 | + | 40753 | 0.66 | 0.669084 |
Target: 5'- -gACCGGCcaGCCCGAcugGCGGGCa---- -3' miRNA: 3'- agUGGCUGa-UGGGCU---UGCCCGgcaag -5' |
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18709 | 3' | -56.4 | NC_004682.1 | + | 131 | 0.66 | 0.647328 |
Target: 5'- -gGCuCGACcGCCgGcACGGGCCGg-- -3' miRNA: 3'- agUG-GCUGaUGGgCuUGCCCGGCaag -5' |
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18709 | 3' | -56.4 | NC_004682.1 | + | 5446 | 0.67 | 0.603728 |
Target: 5'- gCGCUGGCcgAUCUGAAgUGGGCCGgcaUCg -3' miRNA: 3'- aGUGGCUGa-UGGGCUU-GCCCGGCa--AG- -5' |
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18709 | 3' | -56.4 | NC_004682.1 | + | 17263 | 0.67 | 0.603728 |
Target: 5'- aCGCCuucGGCUACCUGucCGGGUcgcugaacaCGUUCg -3' miRNA: 3'- aGUGG---CUGAUGGGCuuGCCCG---------GCAAG- -5' |
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18709 | 3' | -56.4 | NC_004682.1 | + | 23459 | 0.67 | 0.592864 |
Target: 5'- uUCACCGAggACgCCGucCGGGagaUGUUCg -3' miRNA: 3'- -AGUGGCUgaUG-GGCuuGCCCg--GCAAG- -5' |
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18709 | 3' | -56.4 | NC_004682.1 | + | 9067 | 0.67 | 0.592864 |
Target: 5'- aCACCGACUcCCUGGugcauGGCCGgUCg -3' miRNA: 3'- aGUGGCUGAuGGGCUugc--CCGGCaAG- -5' |
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18709 | 3' | -56.4 | NC_004682.1 | + | 31995 | 0.67 | 0.571244 |
Target: 5'- -gACCGGCUGCUCGGGCGGcGagaCGa-- -3' miRNA: 3'- agUGGCUGAUGGGCUUGCC-Cg--GCaag -5' |
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18709 | 3' | -56.4 | NC_004682.1 | + | 9444 | 0.68 | 0.549819 |
Target: 5'- gUCACCGacgcaGCUGCCCGGACGcugauGCUGa-- -3' miRNA: 3'- -AGUGGC-----UGAUGGGCUUGCc----CGGCaag -5' |
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18709 | 3' | -56.4 | NC_004682.1 | + | 22746 | 0.68 | 0.518177 |
Target: 5'- -aGCCG-CUggACCUGAGCGaGCUGUUCg -3' miRNA: 3'- agUGGCuGA--UGGGCUUGCcCGGCAAG- -5' |
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18709 | 3' | -56.4 | NC_004682.1 | + | 23639 | 0.69 | 0.487283 |
Target: 5'- aUCAUCGAC-ACCCuGAccgACGGGCCu--- -3' miRNA: 3'- -AGUGGCUGaUGGG-CU---UGCCCGGcaag -5' |
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18709 | 3' | -56.4 | NC_004682.1 | + | 18322 | 0.69 | 0.456303 |
Target: 5'- cUCcCCGGCUaaggaagGCCCGuucuCGGGCCGa-- -3' miRNA: 3'- -AGuGGCUGA-------UGGGCuu--GCCCGGCaag -5' |
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18709 | 3' | -56.4 | NC_004682.1 | + | 41495 | 0.73 | 0.259174 |
Target: 5'- aUCAgCGACUccagACCCgcGAACGGGUCGUccUCg -3' miRNA: 3'- -AGUgGCUGA----UGGG--CUUGCCCGGCA--AG- -5' |
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18709 | 3' | -56.4 | NC_004682.1 | + | 43847 | 0.66 | 0.625516 |
Target: 5'- aCACCGACgugacCCCGAACuucgacuGGUgGUUCc -3' miRNA: 3'- aGUGGCUGau---GGGCUUGc------CCGgCAAG- -5' |
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18709 | 3' | -56.4 | NC_004682.1 | + | 6300 | 0.66 | 0.647328 |
Target: 5'- cUCACCGuCgaccACCUGGugGGuGCggCGUUCg -3' miRNA: 3'- -AGUGGCuGa---UGGGCUugCC-CG--GCAAG- -5' |
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18709 | 3' | -56.4 | NC_004682.1 | + | 22999 | 0.66 | 0.658218 |
Target: 5'- aUCACCGGCUcaACCCaGGugGuGUCGaUCg -3' miRNA: 3'- -AGUGGCUGA--UGGG-CUugCcCGGCaAG- -5' |
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18709 | 3' | -56.4 | NC_004682.1 | + | 48301 | 0.66 | 0.669084 |
Target: 5'- gUCG-CGGCUGgCCGAuACGaGGCCGgcgUCc -3' miRNA: 3'- -AGUgGCUGAUgGGCU-UGC-CCGGCa--AG- -5' |
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18709 | 3' | -56.4 | NC_004682.1 | + | 45935 | 0.66 | 0.669084 |
Target: 5'- aUCACCGACUACacuaCGAACucGCCu--- -3' miRNA: 3'- -AGUGGCUGAUGg---GCUUGccCGGcaag -5' |
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18709 | 3' | -56.4 | NC_004682.1 | + | 18086 | 0.66 | 0.669084 |
Target: 5'- cCACCGAUgguggcugccGCCUGAGCGaaGGCCGc-- -3' miRNA: 3'- aGUGGCUGa---------UGGGCUUGC--CCGGCaag -5' |
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18709 | 3' | -56.4 | NC_004682.1 | + | 48880 | 0.76 | 0.179689 |
Target: 5'- aUCGCCGGCaACCCGGACGuGCaGUUCu -3' miRNA: 3'- -AGUGGCUGaUGGGCUUGCcCGgCAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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