miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18709 5' -57 NC_004682.1 + 16795 0.66 0.629879
Target:  5'- cUCGGCCUGACCcgUAUggguugguuggucaCAGGCGucuuCGuGGCg -3'
miRNA:   3'- -AGCUGGACUGG--AUGa-------------GUCCGU----GC-CCG- -5'
18709 5' -57 NC_004682.1 + 42753 0.66 0.625516
Target:  5'- aCGGCUgggucagGACgUGCcacgCGGGCAgacCGGGCu -3'
miRNA:   3'- aGCUGGa------CUGgAUGa---GUCCGU---GCCCG- -5'
18709 5' -57 NC_004682.1 + 27934 0.66 0.625516
Target:  5'- cCGGgCUGGCCU--UCGGGCuggucCGGGg -3'
miRNA:   3'- aGCUgGACUGGAugAGUCCGu----GCCCg -5'
18709 5' -57 NC_004682.1 + 33616 0.66 0.624426
Target:  5'- gCGAgCUGuuC-ACUCGGGUccagaacGCGGGCc -3'
miRNA:   3'- aGCUgGACugGaUGAGUCCG-------UGCCCG- -5'
18709 5' -57 NC_004682.1 + 1838 0.66 0.621154
Target:  5'- cCGuCCgGGCguCUGCUCGGGCuccccggccccauCGGGCc -3'
miRNA:   3'- aGCuGGaCUG--GAUGAGUCCGu------------GCCCG- -5'
18709 5' -57 NC_004682.1 + 130 0.66 0.614614
Target:  5'- -gGGCUcGACCg---CcGGCACGGGCc -3'
miRNA:   3'- agCUGGaCUGGaugaGuCCGUGCCCG- -5'
18709 5' -57 NC_004682.1 + 36804 0.66 0.614614
Target:  5'- -gGACCgauuCCUGgUCAGG-AUGGGCc -3'
miRNA:   3'- agCUGGacu-GGAUgAGUCCgUGCCCG- -5'
18709 5' -57 NC_004682.1 + 46974 0.66 0.614614
Target:  5'- uUCGAgCUGAUC-GC-CAaGUACGGGCu -3'
miRNA:   3'- -AGCUgGACUGGaUGaGUcCGUGCCCG- -5'
18709 5' -57 NC_004682.1 + 37372 0.66 0.603728
Target:  5'- aUCGACCUGcuGCCUGagUUCAacaagaucGCAcCGGGCu -3'
miRNA:   3'- -AGCUGGAC--UGGAU--GAGUc-------CGU-GCCCG- -5'
18709 5' -57 NC_004682.1 + 35880 0.66 0.592864
Target:  5'- -aGACCUGGCCggaaacGGUGCGGcGCg -3'
miRNA:   3'- agCUGGACUGGaugaguCCGUGCC-CG- -5'
18709 5' -57 NC_004682.1 + 6330 0.66 0.592864
Target:  5'- cCGACCcgcugGGuCCgggACUCcccgccgacacGGCGCGGGCg -3'
miRNA:   3'- aGCUGGa----CU-GGa--UGAGu----------CCGUGCCCG- -5'
18709 5' -57 NC_004682.1 + 18355 0.66 0.592864
Target:  5'- -aGGCUgggUGAgCUACUCGGGuCAgucugUGGGCg -3'
miRNA:   3'- agCUGG---ACUgGAUGAGUCC-GU-----GCCCG- -5'
18709 5' -57 NC_004682.1 + 33731 0.66 0.582034
Target:  5'- gUCGugUUGACCU--UCAagggcGGCAcCGGGUu -3'
miRNA:   3'- -AGCugGACUGGAugAGU-----CCGU-GCCCG- -5'
18709 5' -57 NC_004682.1 + 30483 0.67 0.571244
Target:  5'- uUCGACCgGGCCUACcCcGGCGugcaGcGGCu -3'
miRNA:   3'- -AGCUGGaCUGGAUGaGuCCGUg---C-CCG- -5'
18709 5' -57 NC_004682.1 + 6497 0.67 0.560504
Target:  5'- gUCaACCUGGCgggCUACUCgcaAGGCGCGGuGg -3'
miRNA:   3'- -AGcUGGACUG---GAUGAG---UCCGUGCC-Cg -5'
18709 5' -57 NC_004682.1 + 7126 0.67 0.560504
Target:  5'- gCGGCUgguACCUgcccgagaagacGCUC-GGCugGGGCg -3'
miRNA:   3'- aGCUGGac-UGGA------------UGAGuCCGugCCCG- -5'
18709 5' -57 NC_004682.1 + 4697 0.67 0.560504
Target:  5'- gUCGGCCUGAUCgag-CAGGUGCuGGa -3'
miRNA:   3'- -AGCUGGACUGGaugaGUCCGUGcCCg -5'
18709 5' -57 NC_004682.1 + 48712 0.67 0.549819
Target:  5'- gUCGACCaGACCUucGCagaAGGCAa-GGCg -3'
miRNA:   3'- -AGCUGGaCUGGA--UGag-UCCGUgcCCG- -5'
18709 5' -57 NC_004682.1 + 3177 0.67 0.539199
Target:  5'- aCGGCg-GGCCa----GGGCGCGGGCa -3'
miRNA:   3'- aGCUGgaCUGGaugagUCCGUGCCCG- -5'
18709 5' -57 NC_004682.1 + 1723 0.67 0.52865
Target:  5'- gUCGGCuCUGuCCUACgUC-GGCACGccgaccGGCa -3'
miRNA:   3'- -AGCUG-GACuGGAUG-AGuCCGUGC------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.