Results 1 - 20 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18709 | 5' | -57 | NC_004682.1 | + | 24076 | 1.12 | 0.000358 |
Target: 5'- uUCGACCUGACCUACUCAGGCACGGGCa -3' miRNA: 3'- -AGCUGGACUGGAUGAGUCCGUGCCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 2941 | 0.77 | 0.133199 |
Target: 5'- aUGaACCUGAUCgACUUcugGGGCGCGGGCg -3' miRNA: 3'- aGC-UGGACUGGaUGAG---UCCGUGCCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 21290 | 0.74 | 0.22438 |
Target: 5'- aCGgcuGCCUGGUCUgggacaucaucgacaACUCGGGCugGGGCa -3' miRNA: 3'- aGC---UGGACUGGA---------------UGAGUCCGugCCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 38815 | 0.72 | 0.286638 |
Target: 5'- aCGACCUgGACaaguucaUGCUCGGGUACGuGGa -3' miRNA: 3'- aGCUGGA-CUGg------AUGAGUCCGUGC-CCg -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 20336 | 0.72 | 0.301208 |
Target: 5'- cCGACgaGACCUGCUCcacaCGCGGGUc -3' miRNA: 3'- aGCUGgaCUGGAUGAGucc-GUGCCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 12566 | 0.71 | 0.308705 |
Target: 5'- gUGAagCUGACCgAC-CAGGuCGCGGGCa -3' miRNA: 3'- aGCUg-GACUGGaUGaGUCC-GUGCCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 41897 | 0.7 | 0.365139 |
Target: 5'- uUCGuCCUGACCUACgcgcugCuGGCGCGaGUc -3' miRNA: 3'- -AGCuGGACUGGAUGa-----GuCCGUGCcCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 46365 | 0.7 | 0.385174 |
Target: 5'- aCGGCCagagggaUGGCCgcaacgccgcguucGCUCGGGCGCuGGCg -3' miRNA: 3'- aGCUGG-------ACUGGa-------------UGAGUCCGUGcCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 40993 | 0.69 | 0.408681 |
Target: 5'- gCGGCCUGGCCaGCUCGGugccguagugcuuGCGCucgaucacgauGGGCc -3' miRNA: 3'- aGCUGGACUGGaUGAGUC-------------CGUG-----------CCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 8160 | 0.69 | 0.418892 |
Target: 5'- gUGACCgGAUCacGCUCGGGUucgACGGGUc -3' miRNA: 3'- aGCUGGaCUGGa-UGAGUCCG---UGCCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 36747 | 0.68 | 0.457286 |
Target: 5'- aUCGGuCCuUGGCCUucgGCUCcaGGGCGaGGGCc -3' miRNA: 3'- -AGCU-GG-ACUGGA---UGAG--UCCGUgCCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 11497 | 0.68 | 0.497488 |
Target: 5'- cCGGCgUucGACCccACUCAgGGCuCGGGCa -3' miRNA: 3'- aGCUGgA--CUGGa-UGAGU-CCGuGCCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 17238 | 0.68 | 0.497488 |
Target: 5'- cUGAcCCUGGCCaGCUCGGGCuccgACGccuucGGCu -3' miRNA: 3'- aGCU-GGACUGGaUGAGUCCG----UGC-----CCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 7300 | 0.68 | 0.497488 |
Target: 5'- gCGAgggcauCCUGcGCCgcCUCaaGGGCugGGGCa -3' miRNA: 3'- aGCU------GGAC-UGGauGAG--UCCGugCCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 38657 | 0.67 | 0.518177 |
Target: 5'- cCGugCUccugcGACCaGCgCAGGUACGGGa -3' miRNA: 3'- aGCugGA-----CUGGaUGaGUCCGUGCCCg -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 39370 | 0.67 | 0.527599 |
Target: 5'- gUCGACCacGACC-ACgaaaCAGGCAUcgucaggGGGCu -3' miRNA: 3'- -AGCUGGa-CUGGaUGa---GUCCGUG-------CCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 1723 | 0.67 | 0.52865 |
Target: 5'- gUCGGCuCUGuCCUACgUC-GGCACGccgaccGGCa -3' miRNA: 3'- -AGCUG-GACuGGAUG-AGuCCGUGC------CCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 12083 | 0.67 | 0.52865 |
Target: 5'- --aACCUGACCacgGCgUCGGGUccGCaGGGCa -3' miRNA: 3'- agcUGGACUGGa--UG-AGUCCG--UG-CCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 24194 | 0.67 | 0.52865 |
Target: 5'- -aGACgCUGACCgACUacCAGaGCAucuCGGGCa -3' miRNA: 3'- agCUG-GACUGGaUGA--GUC-CGU---GCCCG- -5' |
|||||||
18709 | 5' | -57 | NC_004682.1 | + | 3177 | 0.67 | 0.539199 |
Target: 5'- aCGGCg-GGCCa----GGGCGCGGGCa -3' miRNA: 3'- aGCUGgaCUGGaugagUCCGUGCCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home